back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Cht9 and Chil3

DIOPT Version :9

Sequence 1:	NP_611543.3	Gene:	Cht9 / 37392	FlyBaseID:	FBgn0034582	Length:	368	Species:	Drosophila melanogaster
Sequence 2:	NP_034022.2	Gene:	Chil3 / 12655	MGIID:	1330860	Length:	398	Species:	Mus musculus

Alignment Length:	393	Identity:	145/393 - (36%)
Similarity:	209/393 - (53%)	Gaps:	33/393 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MGKLLAL--LAVLCLSQVIGAERIVNCYWGTWANYRSGNGKFDVSNIDAGLCTHLSYSFFGINDN 63
            |.||:.:  ||:| |:..:|:...:.||:.:||..|...|.|...|||..|||||.|:|.|:.:|
Mouse     1 MAKLILVTGLAIL-LNVQLGSSYQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNN 64

  Fly    64 GEIQSLDTWL-DYDLGFINQAISLKNQNSNLKVLAVVGGWNEGSTKYSSMSGDWYKRQNFINSAL 127
             ||    |:. :.||........||::|:.||.|..:|||..|...:|:|......||.||.|.:
Mouse    65 -EI----TYTHEQDLRDYEALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVI 124

  Fly   128 NLLRNHGFDGLDLDWEYPNQRGGNWNDRANFVTLLREIKEAFAPYGYELGI------AVGAG-ES 185
            ..||.:.||||:|||:||..||....|:..|..|::|:::||.....|..|      :.||| ..
Mouse   125 RFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIID 189

  Fly   186 LASASYEIANIAQQVDFINVMTYDFAMASDGQTGFNAPQWA------------VENAINFWLSQG 238
            :..:.|:|..::|.:|:|.|||||.....||.||.|:|.:.            |::.|::|...|
Mouse   190 VIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHG 254

  Fly   239 APANKLVLGVGTYGRSFQLSDSSQNWPGAPCRGEGSAGSYTGSTGYLGYNEICQ--NNWHT-VFD 300
            |.:.||::|...||.:|.|||.|:...|||....|..|.||..:|.|.|.|:|.  |...| |:|
Mouse   255 AASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEVWD 319

  Fly   301 YDNAAPYAYSGDQWVSFDNVLSVQYKMDFALSKGLAGAMIWSLETDDYRGQ-CGET-YPLLKTIN 363
            .....||||.|::||.:|||.|.:.|..:.....|.||::|.|:.||:.|. |.:. :||..|:.
Mouse   320 APQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTSTLK 384

  Fly   364 RKL 366
            ..|
Mouse   385 GDL 387

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.