DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht8 and lmd-4

DIOPT Version :9

Sequence 1:NP_611542.2 Gene:Cht8 / 37390 FlyBaseID:FBgn0034580 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_504862.2 Gene:lmd-4 / 179121 WormBaseID:WBGene00017233 Length:2011 Species:Caenorhabditis elegans


Alignment Length:505 Identity:146/505 - (28%)
Similarity:225/505 - (44%) Gaps:107/505 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SSSAQGNSSKNVVCYQGTW---SVYRPGLGKFGMEDIDPFLCTHLIYAFLGIEETGQLR--VIDA 79
            ||....:..|.:|.|...|   .:....|.|.          ||:|:||:.:.|.|.::  .:. 
 Worm  1470 SSLPAASCGKRIVGYYTGWGDREITENQLKKL----------THVIFAFVAMYEDGSVKFGAVS- 1523

  Fly    80 YLDLEENSGRGNIKS----FNALKLK----NPVLKTLVAVGGWNEGSKRFSLVARDPSKREKFVD 136
                |::||....|.    |..:|.|    |..::.|.||||| :.|:.||.||.|..||:||||
 Worm  1524 ----EDDSGPQAAKKAERRFLNMKKKARAANSGVRVLFAVGGW-DNSQYFSSVAADSGKRKKFVD 1583

  Fly   137 DVVRFLQRHGFDGLDLDWEYPGQRHSLDNEDRSNYITFLKELKEGL----------EPFGFILSA 191
            .:..|::....||:|||||||..    :.:|..|::..:||::|..          :|:...|::
 Worm  1584 SIASFVEDQKIDGVDLDWEYPDS----NGKDAKNHVQLIKEIREKFSEMAKKKKRKDPYVITLAS 1644

  Fly   192 AVGSAQFSAEISYDIPAMVPYLDLINVMAYDLHGPWDQ----VVGINAPLYAAEKDASDSSGRQQ 252
            |.|  :::....||:..::.|.|.||||.||.:|.|:.    ..|..||||     .....|...
 Worm  1645 AAG--EWNLRKGYDLKGILKYADFINVMTYDYYGAWESKWGAYTGTPAPLY-----FGSLKGFSG 1702

  Fly   253 QLNVDAVVKYWLKAGAPAEKLILGVPFYGRSF--TLATAEGN----QPGAPHIGKGIAGNYSREP 311
            :||.|..:|::........:|.:|||||||.:  .|...:.:    :..||..||       .|.
 Worm  1703 KLNADFSMKFYACKTEKPSQLNMGVPFYGRYWKNVLGPIDKSDNMWRTAAPQNGK-------YEG 1760

  Fly   312 GVLGYNELCEMMEREEWTQ---KWEATQQVPYAYRQ--RQWVGYEDPRSLALKAQYVMDNHLGGI 371
            |.:|:..|.    :|.|.:   .|....:.||....  ::::|:|:.|||..|.:|..|.:|||:
 Worm  1761 GYVGWRNLA----KEGWNKGSASWHEKTKTPYIMNNGAKKFLGFENERSLKEKMKYATDRNLGGL 1821

  Fly   372 MIWSLESDDFRGTCGQQPYPLLHEINRV-LFGGNTPSGLT------------TESNRESPSEGFS 423
            |||:|:.||...|       ||:.::.. |..|.....:|            |..|.:...:| .
 Worm  1822 MIWALDLDDDADT-------LLNLVSSAGLCSGGKGDKVTYKCVPIDDVRWWTPENSDEKKQG-Q 1878

  Fly   424 CPADAPA--GY--IRDPDN-----CSKFYYCSGGKTHNFDCPSGLNFDLD 464
            |...||.  |:  :.|||:     |....||..||.: .||...:|:..|
 Worm  1879 CGKSAPLINGFYPVCDPDDPGFSCCGAAGYCGSGKEY-CDCKGCVNYRKD 1927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht8NP_611542.2 GH18_chitolectin_chitotriosidase 31..400 CDD:119351 121/407 (30%)
Glyco_18 31..379 CDD:214753 116/385 (30%)
CBM_14 424..476 CDD:279884 16/50 (32%)
lmd-4NP_504862.2 LysM 25..65 CDD:197609
LysM 79..120 CDD:197609
LysM 142..185 CDD:197609
LysM 209..250 CDD:197609
LysM 270..313 CDD:197609
LysM 334..377 CDD:197609
LysM 401..444 CDD:197609
LysM 469..509 CDD:197609
LysM 550..590 CDD:197609
LysM 635..678 CDD:197609
LysM 710..750 CDD:197609
LysM 760..802 CDD:197609
LysM 876..919 CDD:197609
Self-incomp_S1 1359..1433 CDD:283566
Glyco_18 1480..1825 CDD:214753 114/382 (30%)
GH18_chitinase-like 1481..1824 CDD:299167 113/380 (30%)
ChtBD1_GH18_2 1873..1924 CDD:211315 15/52 (29%)
ChtBD1_GH18_2 1951..2002 CDD:211315
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164322
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1289629at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4747
orthoMCL 1 0.900 - - OOG6_100224
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.650

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