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Protein Alignment Cht8 and Chia

DIOPT Version :9

Sequence 1:	NP_611542.2	Gene:	Cht8 / 37390	FlyBaseID:	FBgn0034580	Length:	476	Species:	Drosophila melanogaster
Sequence 2:	NP_997469.1	Gene:	Chia / 113901	RGDID:	1303058	Length:	473	Species:	Rattus norvegicus

Alignment Length:	492	Identity:	194/492 - (39%)
Similarity:	275/492 - (55%)	Gaps:	48/492 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly     7 LVKLLL--GVILMAASSSAQGNSSKNVVCYQGTWSVYRPGLGKFGMEDIDPFLCTHLIYAFLGIE 69
            :.||:|  |::|:.   :.|..|:.|:|||...|:.||||||.|..:||:|.|||||||||.|:
  Rat     1 MAKLILVTGLVLLL---NVQLGSAYNLVCYFTNWAQYRPGLGSFKPDDINPCLCTHLIYAFAGM- 61

  Fly    70 ETGQLRVI---DAYLDLEENSGRGNIKSFNALKLKNPVLKTLVAVGGWNEGSKRFSLVARDPSKR 131
            :..|:..|   |..|          .|:||.||.:|..||||:|:||||.|:..|:.:......|
  Rat    62 QNNQITTIEWNDVTL----------YKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNR 116

  Fly   132 EKFVDDVVRFLQRHGFDGLDLDWEYPGQRHSLDNEDRSNYITFLKELKEGLEPFG-------FIL 189
            :.|:..|::||:::|||||||||||||.|.| ..:|:..:...:|||:|..|...       .::
  Rat   117 QTFITSVIKFLRQYGFDGLDLDWEYPGSRGS-PPQDKHLFTVLVKELREAFEQEAIESNRPRLMV 180

  Fly   190 SAAVGSAQFSAEISYDIPAMVPYLDLINVMAYDLHGPWDQVVGINAPLYAAEKDASDSSGRQQQL 254
            :|||.:...:.:..|:||.:..|||.|:||.|||||.||...|.|:|||....:    :|....|
  Rat   181 TAAVAAGISNIQAGYEIPELSQYLDFIHVMTYDLHGSWDGYTGENSPLYKLPTE----TGSNAYL 241

  Fly   255 NVDAVVKYWLKAGAPAEKLILGVPFYGRSFTLATAEGNQPGAPHIGKGIAGNYSREPGVLGYNEL 319
            |||.|:.||...||||||||:|.|.||.::.|:.......|||..|.|.||.|:|:.|...|.|:
  Rat   242 NVDYVMNYWKDNGAPAEKLIVGFPEYGHTYILSNPSDTGIGAPTSGNGPAGPYTRQAGFWAYYEI 306

  Fly   320 CEMMEREEWTQKWEATQQVPYAYRQRQWVGYEDPRSLALKAQYVMDNHLGGIMIWSLESDDFRGT 384
            |..: |...||.|:|.|:|||||:..:||||::.:|.::|||::..|:.||.|||:::.|||.|:
  Rat   307 CTFL-RNGATQDWDAPQEVPYAYKGNEWVGYDNIKSFSVKAQWLKQNNFGGAMIWAIDLDDFTGS 370

  Fly   385 -CGQQPYPLLHEINRVL---FGGNTPSGLTTESNRESP------------SEGFSCPADAPAGYI 433
             |.|..:||...:|:.|   ..|.|...|.:|.....|            |||....|....|..
  Rat   371 FCDQGKFPLTSTLNKALDIPTAGCTAPDLPSEPVTTPPGSGSGGGSSGGGSEGSGFCAGKADGLY 435

  Fly   434 RDPDNCSKFYYCSGGKTHNFDCPSGLNFDLDTKSCNY 470
            ...|:.:.|::|..|.|:...|.:||.||.....||:
  Rat   436 PVADDRNAFWHCINGITYQQHCQAGLVFDTSCNCCNW 472

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.