Sequence 1: | NP_476722.1 | Gene: | shg / 37386 | FlyBaseID: | FBgn0003391 | Length: | 1507 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_445845.2 | Gene: | Cdh8 / 84408 | RGDID: | 69286 | Length: | 799 | Species: | Rattus norvegicus |
Alignment Length: | 1263 | Identity: | 256/1263 - (20%) |
---|---|---|---|
Similarity: | 370/1263 - (29%) | Gaps: | 614/1263 - (48%) |
- Green bases have known domain annotations that are detailed below.
Fly 315 LKNFTHPIATLRAVSNMPDKPEVIFELNTGRTEQTNSKNTFVFNQIG-------NEVT--ISLGK 370
Fly 371 TLDYEAITDYTLTMIV---RNTHELGTEHQIKIQVEDVNDNI------PYYTEVKSGTILENEPP 426
Fly 427 GTPVMQVRAFDMD----GTSANNIVSFELADNREYFTIDPNTGNI-TALTTFDREERDFYNVKVI 486
Fly 487 ASDNSPSSLFDNGEPNRGHQ-------VFRISIGDKNDHKPHFQQDKYLAERLLEDANTNTEVIE 544
Fly 545 VKAEDED---NASQILYSIESGNVGDAFKI----GLKTGKITVNQKLDYETITEYELKVRAFD-- 600
Fly 601 --------GIYDDYTTVVIKIEDVNDNPPVFKQ-DYSVTILEETTYDDCILTVEAYDPDIK---- 652
Fly 653 ----DRNADQHIVYSIHQNDGNRWTIDNSGCLRLVKTLDRDPPNGHKNWQVLIKANDEDGVGTTV 713
Fly 714 ---STVKEVTVTLK--DINDNAPFLINEMPVYWQENRNPGHVVQ-LQANDYDDTPGAGNFTFGID 772
Fly 773 SEA--TPDIKTKFSMDG--DYLHANVQFDREAQKEYFIPIRISDSGVPRQSAVSILHLVIGDVND 833
Fly 834 NAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQFRLNPSTGMITMLV 898
Fly 899 HTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTKEEFISVPRDFQ 963
Fly 964 SPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYYAPEKLNGIVAQNQQ 1028
Fly 1029 RLENELDLQMLMVNIDECLIEKFKCEESCTNELHKSSVPYMIYSNTTSFVGVNAFVQAQCVCEAP 1093
Fly 1094 LMRRCLNGGSPRYGENDVCDCIDGFTGPHCELVSVAFYGSGYAFYEPIAACNNTKISLEITPQID 1158
Fly 1159 QGLIMYLGPLNFNPLLAISDFLALELDNGYPVLTVDYGSGAIRIRHQHIKMVADRTYQLDIILQR 1223
Fly 1224 TSIEMTVDNCRLSTCQTLGAPIGPNEFLNVNAPLQLGGTPVDLEQLGRQLNWTHVPNQKGFFGCI 1288
Fly 1289 RNLTINEQTYNLGMPSVFRNIDSGCQQSVAVAFSFGIDRNFIIAIIVCLALLLIILLAVVVQKKQ 1353
Fly 1354 KNGWHE----KDIDDIRETIINYEDEGGGERDTD-YDLNVLRT----QPFYEEKLYKD-----PH 1404
Fly 1405 ALQGNMRDPNDIPDIADFLGDKKENCDRDVGATTVDDVRHYAYEGDGNSDGSLSSLASCTDDGDL 1469
Fly 1470 NFDYLSNFGPRFRKLADMYGEEPSDTDS 1497 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
shg | NP_476722.1 | Cadherin_repeat | 93..191 | CDD:206637 | |
Cadherin_repeat | 200..292 | CDD:206637 | |||
CA | 332..410 | CDD:214520 | 23/95 (24%) | ||
Cadherin_repeat | 417..518 | CDD:206637 | 32/112 (29%) | ||
Cadherin_repeat | 531..619 | CDD:206637 | 34/104 (33%) | ||
Cadherin_repeat | 627..729 | CDD:206637 | 28/114 (25%) | ||
Cadherin_repeat | 736..834 | CDD:206637 | 31/102 (30%) | ||
LamG | 1127..1294 | CDD:238058 | 9/166 (5%) | ||
Cadherin_C | 1358..1489 | CDD:279398 | 59/144 (41%) | ||
Cdh8 | NP_445845.2 | CA | 87..165 | CDD:214520 | 21/78 (27%) |
Cadherin_repeat | 171..272 | CDD:206637 | 35/119 (29%) | ||
Cadherin_repeat | 281..387 | CDD:206637 | 35/108 (32%) | ||
Cadherin_repeat | 395..492 | CDD:206637 | 28/115 (24%) | ||
Cadherin_repeat | 499..602 | CDD:206637 | 37/486 (8%) | ||
Cadherin_C | 653..790 | CDD:279398 | 58/139 (42%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |