DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shg and Cdh11

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_445844.1 Gene:Cdh11 / 84407 RGDID:619742 Length:796 Species:Rattus norvegicus


Alignment Length:1173 Identity:263/1173 - (22%)
Similarity:380/1173 - (32%) Gaps:496/1173 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   411 YYTEVKSGTILENEPPG---------------TPVMQVRAF-DMDGTSAN--NIVSFELADNREY 457
            ::.:.|.|.:|:....|               .||:..|.. |:|....|  .|:|.|.|..  .
  Rat    38 HHEKGKEGQVLQRSKRGWVWNQFFVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGT--I 100

  Fly   458 FTIDPNTGNITALTTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKNDHKPHF 522
            |.||..:|||.|..|.|||||..|.:...|.|.      |...|......|.:.:.|.||:.|.|
  Rat   101 FVIDDKSGNIHATKTLDREERAQYTLMAQAVDR------DTNRPLEPPSEFIVKVQDINDNPPEF 159

  Fly   523 QQDKYLAERLLEDANTNTEVIEVKAEDED-----NASQILYSIESGNVGDAFKIGLKTGKI-TVN 581
            ..:.|.| .:.|.:|..|.||:|.|.|.|     |:::::|||..|.  ..|.:..:||.| |..
  Rat   160 LHETYHA-NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGIIRTAL 221

  Fly   582 QKLDYETITEYELKVRAFD-----GIYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDDC 640
            ..:|.|...||.:.::|.|     |.....|.|.|.:.|||||||.|.|. |.:::.|.....:.
  Rat   222 PNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEAAVPGEE 286

  Fly   641 ILTVEAYDPDIKDRNADQHIVYSIHQNDGNRW---TID---NSGCLRLVKTLD----------RD 689
            :..|:|.||||.:...   :.|:|...||...   |.|   ..|.::|.|.:|          .:
  Rat   287 VGRVKAKDPDIGENGL---VTYNIVDGDGMELFEITTDYETQDGVVKLKKPVDFETKRAYSLKVE 348

  Fly   690 PPNGHKNWQVLIKANDEDGVGTTVSTVKEVTVTLKDINDN----APFLINEMPVYWQENRNPGHV 750
            ..|.|.:.:.:.....:|.|     |||   :.::|.::.    ||..|:|:    |||...|.|
  Rat   349 AANVHIDPKFISNGPFKDTV-----TVK---IAVEDADEPPMFLAPSYIHEV----QENAAAGTV 401

  Fly   751 V-QLQANDYDDTPGAGN--FTFGIDSEATPDIKTKFSMDGDYLHANVQFDREAQKEYFIPI---- 808
            | ::.|.|    |.|.|  ..:.||.....|.....:.:..::......|||......|.:    
  Rat   402 VGRVHAKD----PDAANSPIRYSIDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNISVFAAE 462

  Fly   809 ---RISDSGVPRQSAVSILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETD---------IGRVF 861
               |..::.||  .|:.:|     ||||||..      |...|:|...|:|         |..|.
  Rat   463 IHNRHQEAKVP--VAIRVL-----DVNDNAPK------FAAPYEGFICESDHPKPLSNQPIVTVS 514

  Fly   862 VDDLDDWDLEDKYFEWKDLPHDQFRLNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAY 926
            .|||||                                ||.|               ||      
  Rat   515 ADDLDD--------------------------------TANG---------------PR------ 526

  Fly   927 VTVVVRELPEEAVDKSGSIRFINVTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDV 991
               .:..||.|.:                       .:|:                         
  Rat   527 ---FIFSLPPEII-----------------------HNPN------------------------- 540

  Fly   992 FTVLQNENHTLDVRFSAHGSPYYAPEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEES 1056
            |||..|.::|..|         ||  :..|...|.|       ||.:|.:.|.:           
  Rat   541 FTVRDNRDNTAGV---------YA--RRGGFSRQKQ-------DLYLLPIVISD----------- 576

  Fly  1057 CTNELHKSSVPYMIYSNTTSFVGVNAFVQAQCVCEAPLMRRCLNGGSPRYGENDVCDCIDGFTGP 1121
                   ..:|.|..:||.:.                                .||.|       
  Rat   577 -------GGIPPMSSTNTLTI--------------------------------KVCGC------- 595

  Fly  1122 HCELVSVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNFNPLLAISDFLALELDN 1186
                                                                             
  Rat   596 ----------------------------------------------------------------- 595

  Fly  1187 GYPVLTVDYGSGAIRIRHQHIKMVADRTYQLDIILQRTSIEMTVDNCRLSTCQTLGAPIGPNEFL 1251
                                                                             
  Rat   596 ----------------------------------------------------------------- 595

  Fly  1252 NVNAPLQLGGTPVDLEQLGRQLNWTHVPNQKGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQS 1316
            :||..|                                 |:.|.:.|.|                
  Rat   596 DVNGAL---------------------------------LSCNAEAYIL---------------- 611

  Fly  1317 VAVAFSFGIDRNFIIAIIVCLALLLIILLAVVVQKKQKNG----WHEKDIDDIRETIINYEDEGG 1377
                 :.|:....:|||:.|:.:||:|::..|..::||..    :.|   :|:||.||.|:||||
  Rat   612 -----NAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEE---EDVRENIITYDDEGG 668

  Fly  1378 GERDTD-YDLNVLRT----QPFYEEKLYKDPHALQ---GNMRDPNDIPDIADFLGDKKENCDRDV 1434
            ||.||: :|:..|:.    ..|...|..|..:...   |....||.: |:.||:..:.:..|.|.
  Rat   669 GEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSV-DVDDFINTRIQEADNDP 732

  Fly  1435 GATTVDDVRHYAYEGDGNSDGSLSSLASCTDDGDLNFDYLSNFGPRFRKLADMYGEEPSDTDSNV 1499
            .|...|.::.|.|||.|:..||||||.|.|.|.||::|||.|:||||:||||:||.:  ||   .
  Rat   733 TAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFKKLADLYGSK--DT---F 792

  Fly  1500 DDD 1502
            |||
  Rat   793 DDD 795

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520
Cadherin_repeat 417..518 CDD:206637 34/118 (29%)
Cadherin_repeat 531..619 CDD:206637 32/98 (33%)
Cadherin_repeat 627..729 CDD:206637 26/117 (22%)
Cadherin_repeat 736..834 CDD:206637 27/107 (25%)
LamG 1127..1294 CDD:238058 4/166 (2%)
Cadherin_C 1358..1489 CDD:279398 58/138 (42%)
Cdh11NP_445844.1 CA 79..157 CDD:214520 29/85 (34%)
Cadherin_repeat 163..264 CDD:206637 34/103 (33%)
Cadherin_repeat 272..379 CDD:206637 26/117 (22%)
Cadherin_repeat 387..484 CDD:206637 28/111 (25%)
CA 514..598 CDD:214520 36/392 (9%)
Cadherin_C 649..787 CDD:279398 58/141 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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