Sequence 1: | NP_476722.1 | Gene: | shg / 37386 | FlyBaseID: | FBgn0003391 | Length: | 1507 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_445844.1 | Gene: | Cdh11 / 84407 | RGDID: | 619742 | Length: | 796 | Species: | Rattus norvegicus |
Alignment Length: | 1173 | Identity: | 263/1173 - (22%) |
---|---|---|---|
Similarity: | 380/1173 - (32%) | Gaps: | 496/1173 - (42%) |
- Green bases have known domain annotations that are detailed below.
Fly 411 YYTEVKSGTILENEPPG---------------TPVMQVRAF-DMDGTSAN--NIVSFELADNREY 457
Fly 458 FTIDPNTGNITALTTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKNDHKPHF 522
Fly 523 QQDKYLAERLLEDANTNTEVIEVKAEDED-----NASQILYSIESGNVGDAFKIGLKTGKI-TVN 581
Fly 582 QKLDYETITEYELKVRAFD-----GIYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDDC 640
Fly 641 ILTVEAYDPDIKDRNADQHIVYSIHQNDGNRW---TID---NSGCLRLVKTLD----------RD 689
Fly 690 PPNGHKNWQVLIKANDEDGVGTTVSTVKEVTVTLKDINDN----APFLINEMPVYWQENRNPGHV 750
Fly 751 V-QLQANDYDDTPGAGN--FTFGIDSEATPDIKTKFSMDGDYLHANVQFDREAQKEYFIPI---- 808
Fly 809 ---RISDSGVPRQSAVSILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETD---------IGRVF 861
Fly 862 VDDLDDWDLEDKYFEWKDLPHDQFRLNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAY 926
Fly 927 VTVVVRELPEEAVDKSGSIRFINVTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDV 991
Fly 992 FTVLQNENHTLDVRFSAHGSPYYAPEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEES 1056
Fly 1057 CTNELHKSSVPYMIYSNTTSFVGVNAFVQAQCVCEAPLMRRCLNGGSPRYGENDVCDCIDGFTGP 1121
Fly 1122 HCELVSVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNFNPLLAISDFLALELDN 1186
Fly 1187 GYPVLTVDYGSGAIRIRHQHIKMVADRTYQLDIILQRTSIEMTVDNCRLSTCQTLGAPIGPNEFL 1251
Fly 1252 NVNAPLQLGGTPVDLEQLGRQLNWTHVPNQKGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQS 1316
Fly 1317 VAVAFSFGIDRNFIIAIIVCLALLLIILLAVVVQKKQKNG----WHEKDIDDIRETIINYEDEGG 1377
Fly 1378 GERDTD-YDLNVLRT----QPFYEEKLYKDPHALQ---GNMRDPNDIPDIADFLGDKKENCDRDV 1434
Fly 1435 GATTVDDVRHYAYEGDGNSDGSLSSLASCTDDGDLNFDYLSNFGPRFRKLADMYGEEPSDTDSNV 1499
Fly 1500 DDD 1502 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
shg | NP_476722.1 | Cadherin_repeat | 93..191 | CDD:206637 | |
Cadherin_repeat | 200..292 | CDD:206637 | |||
CA | 332..410 | CDD:214520 | |||
Cadherin_repeat | 417..518 | CDD:206637 | 34/118 (29%) | ||
Cadherin_repeat | 531..619 | CDD:206637 | 32/98 (33%) | ||
Cadherin_repeat | 627..729 | CDD:206637 | 26/117 (22%) | ||
Cadherin_repeat | 736..834 | CDD:206637 | 27/107 (25%) | ||
LamG | 1127..1294 | CDD:238058 | 4/166 (2%) | ||
Cadherin_C | 1358..1489 | CDD:279398 | 58/138 (42%) | ||
Cdh11 | NP_445844.1 | CA | 79..157 | CDD:214520 | 29/85 (34%) |
Cadherin_repeat | 163..264 | CDD:206637 | 34/103 (33%) | ||
Cadherin_repeat | 272..379 | CDD:206637 | 26/117 (22%) | ||
Cadherin_repeat | 387..484 | CDD:206637 | 28/111 (25%) | ||
CA | 514..598 | CDD:214520 | 36/392 (9%) | ||
Cadherin_C | 649..787 | CDD:279398 | 58/141 (41%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |