DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and Fat1

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:XP_017455748.1 Gene:Fat1 / 83720 RGDID:621254 Length:4624 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520
Cadherin_repeat 417..518 CDD:206637
Cadherin_repeat 531..619 CDD:206637
Cadherin_repeat 627..729 CDD:206637
Cadherin_repeat 736..834 CDD:206637
LamG 1127..1294 CDD:238058
Cadherin_C 1358..1489 CDD:279398
Fat1XP_017455748.1 Cadherin_repeat 39..145 CDD:206637
Cadherin_repeat 154..253 CDD:206637
Cadherin 278..357 CDD:421759
Cadherin_repeat 372..>444 CDD:206637
Cadherin_repeat 468..566 CDD:206637
Cadherin_repeat 576..663 CDD:206637
Cadherin_repeat 725..819 CDD:206637
Cadherin_repeat 827..924 CDD:206637
Cadherin_repeat 932..1016 CDD:206637
Cadherin_repeat 1043..1136 CDD:206637
Cadherin_repeat 1144..1242 CDD:206637
Cadherin_repeat 1251..1345 CDD:206637
Cadherin_repeat 1363..1476 CDD:206637
Cadherin_repeat 1485..1582 CDD:206637
Cadherin_repeat 1590..1686 CDD:206637
Cadherin_repeat 1695..1785 CDD:206637
Cadherin_repeat 1793..1898 CDD:206637
Cadherin_repeat 1919..1994 CDD:206637
Cadherin_repeat 2008..2101 CDD:206637
Cadherin_repeat 2109..2198 CDD:206637
Cadherin_repeat 2211..2303 CDD:206637
Cadherin_repeat 2311..2410 CDD:206637
Cadherin_repeat 2418..2512 CDD:206637
Cadherin_repeat 2520..2616 CDD:206637
Cadherin_repeat 2625..2718 CDD:206637
Cadherin_repeat 2732..2829 CDD:206637
Cadherin_repeat 2837..2937 CDD:206637
Cadherin_repeat 2946..3043 CDD:206637
Cadherin_repeat 3056..3145 CDD:206637
Cadherin_repeat 3153..3250 CDD:206637
Cadherin_repeat 3258..3355 CDD:206637
Cadherin_repeat 3363..3460 CDD:206637
Cadherin_repeat 3469..3560 CDD:206637
Cadherin_repeat 3585..3658 CDD:206637
LamG 3878..4009 CDD:214598
EGF_CA 4040..4074 CDD:238011
EGF_CA 4077..4112 CDD:238011
EGF 4117..4147 CDD:394967
EGF_CA 4151..4187 CDD:238011
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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