DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and fat1b

DIOPT Version :10

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:XP_021328497.1 Gene:fat1b / 565591 ZFINID:ZDB-GENE-130530-563 Length:4503 Species:Danio rerio


Alignment Length:1632 Identity:366/1632 - (22%)
Similarity:592/1632 - (36%) Gaps:499/1632 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 HSPPDKNFSGDNRKPAFKNCAGYAPKVKEEQPENTYVLTVEAVDPDPDQVIRYS-IVQSPFERPK 134
            |||   :|:.|.          |..::.|..|..|.|..|||:|.||.:..:.: .:.:...|.|
Zfish  2512 HSP---SFTQDE----------YLIELAENSPVGTLVGQVEAIDEDPGKYGQLTFFIMNDIARDK 2563

  Fly   135 FFINPSTGVIFTTHTFDRDEPIHEKFVFVTVQATDNGLPPLDDVCTFNVTIEDINDNAPAFNKAR 199
            |.|| ..|.|:|..:|||:.| .||.:.:::.|.|.|  .|...|...|.:.|:|||:|.|..:.
Zfish  2564 FNIN-EDGQIYTEESFDRENP-EEKIIRISLMAKDGG--GLLGFCNVIVILSDVNDNSPKFKHSE 2624

  Fly   200 YDESMSENAQPDAVVMTISASDFDDGNNSLVEYEILRERDFQYFKIDKESGIIYLKRPIDKRPGQ 264
            |..::..:|.....|:..:|.|.|:|:|:.:.|.|  |.|..:|:|...||.|..|..:......
Zfish  2625 YKVTVPRDAPSSTTVIKTTAVDEDEGSNADIVYTI--ESDIDHFEIHSLSGAIVTKESLIGLENG 2687

  Fly   265 SYAIIVRAYNVVPDPPQDAQIEVRIRVVESSIKPPSFVNPIDTPIYLKENLKNFTHPIATLRAVS 329
            .|:..|:|.: ...||:.:.|.|.||:|......|.|..| ...:.|.|:|     .:.|...:.
Zfish  2688 LYSFFVKAKD-SGSPPKQSIIPVSIRIVPPETSIPKFAEP-SLWLELSEDL-----AVGTEMDIF 2745

  Fly   330 NMPDKPEVIFELNTGRTEQTNSKNTFVFNQIGNEVTISLGKTLDYEAITDYTLTMIVRNTH---E 391
            ...::..||:.|..|.|.::|..:.|..:....::.::  |.||||.|..|.|.:.||:..   |
Zfish  2746 QAENELSVIYSLVGGNTPESNKHDVFAIDSTTGKLILT--KRLDYETIKWYHLAVQVRDVKDDME 2808

  Fly   392 LGTEHQIKIQVEDVNDNIPYYTEVK-SGTILENEPPGTPVMQVRAFDMD---------------- 439
            :.:...:.:.::|||||.|.:...: ...|.||.|.||.|:||:|.|:|                
Zfish  2809 MISTVDVSVHLKDVNDNSPQFESFRYQSCIAENLPKGTSVVQVKATDLDSWLNGQITYALHENQQ 2873

  Fly   440 -----------------------------------------------GTSANNIVSFELADN--- 454
                                                           ||:...:...:..||   
Zfish  2874 PPDVLQLFSVNSETGWITTLMEIDREKTDQYRITVVATDGAQGLQMTGTTVVEVTVVDTNDNPPL 2938

  Fly   455 ----------------------------------------------------------------- 454
                                                                             
Zfish  2939 FTEAVFKGAVREDESTPGTVVTILSYVDSDSDEVNRRFNCFITGGDPQGLFDVKHTDGVWVVAVS 3003

  Fly   455 ----------------------------------------------------------------- 454
                                                                             
Zfish  3004 KTLDREERDFYLLNITATDGTFVAKAAVEITVLDANDNSPVCEKDVYAQAVPEDVLIGKHILQVS 3068

  Fly   455 --------------------REYFTIDPNTGNITALTTFDREERDFYNVKV-------------- 485
                                .|.||||..||.:..|.|.|||..|.||:.|              
Zfish  3069 ATDADIQSNAEITYQLSGSGAESFTIDSKTGAVKTLATLDREVTDVYNLTVRAVDKDNHFCQASL 3133

  Fly   486 -----IASDNSPS--------SLFDNGEPN----------------------------------- 502
                 .|:||:|.        |::.|.:|.                                   
Zfish  3134 LITVEDANDNAPKFTSDPHHVSIYQNTQPGTYVARLEAFDADIGMNGKIRYSFEDSAGGLFSIEE 3198

  Fly   503 ---------------RGHQVFRI------------SIG-------DKNDHKPHFQQDKYLAERLL 533
                           :...|.|:            |:|       |.|||.|.|::.:|:: .:.
Zfish  3199 SSGIISLERSLDKQMKAMHVLRVRATDQGFPHRLSSLGSVLVTVLDANDHPPVFERREYIS-TVP 3262

  Fly   534 EDANTNTEVIEVKAEDEDN--ASQILYSIESGNVGDAFKIGLKTGKITVNQKLDYETITEYELKV 596
            ||....|::::|.|..:|.  .||..||..|||...||:|..:||.|.|.:.||||..:::.|.|
Zfish  3263 EDVTIGTKLLKVFASSKDRQMTSQTTYSFSSGNEQGAFRIDSQTGDIFVMEPLDYEESSQHYLTV 3327

  Fly   597 RAFDG---IYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDDCILTVEAYDPDIKDRNAD 657
            :|..|   ...|..||.|.::|:|||.|||.|. ||..:.|:|.....:|||.|.|   .|...:
Zfish  3328 KATVGGKQSLSDMATVSIHLQDINDNSPVFSQKIYSAVVSEDTRLASTVLTVLAND---LDGPLN 3389

  Fly   658 QHIVYSIHQ-NDGNRWTIDN-SGCLRLVKTLDRDPPNGHKNWQVLIKANDEDGVGTTV-STVKEV 719
            ..|.|||.: |....:.:|. ||.|:|.:.|||:..   .::.:.:.|:|.   |:.: |....:
Zfish  3390 NQIRYSIEESNQSCPFIMDAVSGELQLARQLDREMV---ASYMLTVMASDS---GSPLKSDSAAI 3448

  Fly   720 TVTLKDINDNAP-FLINEMPVYWQENRNPG-HVVQLQANDYDDTPGAGNFTF---GIDSEATPDI 779
            .:.:.|:|||.| |......:..|||...| .|:||...|.|.......|:|   |:  ||.|  
Zfish  3449 NIAVSDVNDNPPVFSQANYSLIIQENLPSGTSVLQLNVTDNDSLHNGPPFSFILIGV--EANP-- 3509

  Fly   780 KTKFSMDGDYLHANVQFDREAQK-EYFIPIRISDSGVPRQSAVSILHLVIGDVNDNAMSEGSSRI 843
               ||:|...|   |:......| :|.:.:::||:|.|.|.:|:.:.:::...:....|.....|
Zfish  3510 ---FSIDQQGL---VKTAGPLTKGQYTLQVQVSDNGKPPQKSVTSITVLVAQASMFPPSVFPLEI 3568

  Fly   844 FIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQ--FRLNPSTGMITMLVHT------ 900
            ||...:.|.....:|::...|.|:              ||:  |.|:|.:..:..::.|      
Zfish  3569 FIILLEDEYSGGTLGKIHATDQDE--------------HDKLAFSLDPQSHSLFSIIGTDGRLLA 3619

  Fly   901 ----AEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTKEEFISVP-R 960
                ..|.|.|: |...|..|    ||.:.|.|.|.::.|:.:|.|.||||..:|.|:||... :
Zfish  3620 REGLDVGHYQLN-VSVSDGHF----SVSSIVKVNVLQVTEQMLDSSISIRFAGITTEDFIQDHWK 3679

  Fly   961 DFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNE--NHTLDVRFSAHGSPYY--------A 1015
            :||         ::..|:|.....:::.:.    ||:.  ...|||..      |:        |
Zfish  3680 NFQ---------KMLRSVAGARRGAINLIS----LQSAGFGDGLDVLL------YFERPRRGAGA 3725

  Fly  1016 PEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEE-SCTNELHKSSVPYMIYSNT-TSFV 1078
            .|.|:..::.::..::....|.::.|....||  ..:|.: .|...|..:......||.. .|::
Zfish  3726 LEALSQKISSSRGAIKEMTGLHVVRVLNSRCL--SSECPDGKCRRVLLFNQTTMGAYSTARVSYI 3788

  Fly  1079 GVNAFVQAQCVC-EAPLMRR---CLNGGSPRYGENDVCDCIDGF---------TGP---HCE-LV 1126
            .....:.|:|:| ::..:::   |:|...|     :..:|:.||         ||.   .|. ..
Zfish  3789 TPRHHMTAKCLCTDSKCLKQEYTCVNSTCP-----EGYECVSGFGQDKHSCICTGAAKVKCSGGS 3848

  Fly  1127 SVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNFNPLLAISDFLALELDNGYPVL 1191
            |:.|..|.|..|..:.:....|::|::.....:|.||.......:.|......|..:.|.|:...
Zfish  3849 SMTFSESSYIKYSLMESMKGLKLTLKLKTLSTEGTIMLARGTGHSILEIAGGRLQFQFDCGWGFA 3913

  Fly  1192 TVDYGSGAIRIRHQHIKMVADRTYQLDIILQRTSIEMTVDNCRLSTCQ---TLGAPIGPNEFLNV 1253
            ||..          |..:|.|..:.:      ..:|:..:..||...|   ..|...||...||:
Zfish  3914 TVSV----------HSVLVNDGQWHM------AELEVKGNYARLVLDQLHSASGIAPGPLHCLNL 3962

  Fly  1254 NAPLQLGGTPVDLEQLGRQLNWTHVPNQKGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQSVA 1318
            ...:.|||....|....|:    ::|......||:.::.:|....:|         |||....|.
Zfish  3963 GEQVVLGGHAQHLGSRRRR----NLPASNSLQGCMDSVLLNGHRLSL---------DSGGPLGVT 4014

  Fly  1319 VAFSFGI 1325
            :....|:
Zfish  4015 IEDMVGV 4021

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 33/98 (34%)
Cadherin_repeat 200..292 CDD:206637 27/91 (30%)
CA 332..410 CDD:214520 23/80 (29%)
Cadherin_repeat 417..518 CDD:206637 45/412 (11%)
Cadherin_repeat 531..619 CDD:206637 34/92 (37%)
Cadherin_repeat 627..729 CDD:206637 29/104 (28%)
Cadherin_repeat 736..834 CDD:206637 28/102 (27%)
LamG 1127..1294 CDD:238058 36/169 (21%)
CADH_Y-type_LIR 1430..1489 CDD:460041
fat1bXP_021328497.1 Cadherin_repeat 45..150 CDD:206637
Cadherin_repeat 159..259 CDD:206637
CA_like 272..359 CDD:481204
Cadherin_repeat 377..467 CDD:206637
Cadherin_repeat 476..573 CDD:206637
Cadherin_repeat 584..673 CDD:206637
Cadherin_repeat 729..826 CDD:206637
Cadherin_repeat 834..931 CDD:206637
Cadherin_repeat 939..1036 CDD:206637
Cadherin_repeat 1050..1143 CDD:206637
Cadherin_repeat 1151..1249 CDD:206637
Cadherin_repeat 1273..1347 CDD:206637
Cadherin_repeat 1365..1477 CDD:206637
Cadherin_repeat 1485..1583 CDD:206637
Cadherin_repeat 1591..1687 CDD:206637
Cadherin_repeat 1696..1786 CDD:206637
Cadherin_repeat 1794..1899 CDD:206637
Cadherin_repeat 1908..1996 CDD:206637
Cadherin_repeat 2008..2102 CDD:206637
Cadherin_repeat 2110..2199 CDD:206637
Cadherin_repeat 2211..2303 CDD:206637
Cadherin_repeat 2311..2410 CDD:206637
Cadherin_repeat 2419..2512 CDD:206637 366/1632 (22%)
Cadherin_repeat 2520..2616 CDD:206637 33/109 (30%)
Cadherin_repeat 2624..2714 CDD:206637 27/92 (29%)
Cadherin_repeat 2730..2825 CDD:206637 25/101 (25%)
Cadherin_repeat 2838..>2915 CDD:206637 12/76 (16%)
Cadherin_repeat 2943..3041 CDD:206637 0/97 (0%)
Cadherin_repeat 3054..3143 CDD:206637 17/88 (19%)
Cadherin_repeat 3153..3248 CDD:206637 9/94 (10%)
Cadherin_repeat 3256..3353 CDD:206637 35/97 (36%)
Cadherin_repeat 3361..3458 CDD:206637 29/105 (28%)
Cadherin_repeat 3467..3553 CDD:206637 28/95 (29%)
Cadherin_repeat 3567..3652 CDD:206637 24/103 (23%)
Laminin_G_2 3881..4001 CDD:460494 30/139 (22%)
EGF 4033..4064 CDD:394967
EGF_CA 4069..4104 CDD:238011
EGF 4109..4139 CDD:394967
EGF_CA 4143..4179 CDD:238011
Blue background indicates that the domain is not in the aligned region.

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