Sequence 1: | NP_476722.1 | Gene: | shg / 37386 | FlyBaseID: | FBgn0003391 | Length: | 1507 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_008768930.1 | Gene: | Cdh24 / 498515 | RGDID: | 1560161 | Length: | 781 | Species: | Rattus norvegicus |
Alignment Length: | 1068 | Identity: | 220/1068 - (20%) |
---|---|---|---|
Similarity: | 354/1068 - (33%) | Gaps: | 414/1068 - (38%) |
- Green bases have known domain annotations that are detailed below.
Fly 458 FTIDPNTGNITALTTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKNDHKPHF 522
Fly 523 QQDKYLAERLLEDANTNTEVIEVKAEDED-----NASQILYSIESGNVGDAFKIGLKTGKI-TVN 581
Fly 582 QKLDYETITEYELKVRAFD-----GIYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDDC 640
Fly 641 ILTVEAYDPDIKDRNADQHIVYSIHQNDGNRWTIDNSGCLRLVKTLDRDPPNGHKNWQVLIKAND 705
Fly 706 EDGVGTTVSTVKEVTVTLKDINDNAPFLINEMPVYWQENRNPGHVVQLQANDYDDTPGAGNFTFG 770
Fly 771 IDSEATPDIKTKFSMDGDYLHANVQFDREAQKEYFIPIRISDSGVPRQSAVSILHLVIGDVNDNA 835
Fly 836 MSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQ----FRLNPSTGMITM 896
Fly 897 LV---HTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTKEEFISV 958
Fly 959 PRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYYAPEKLNGIV 1023
Fly 1024 AQNQQRLENELDLQMLMVNIDECLIEKFKCEESCTNELHKSSVPYMIYSNTTSFVGVNAFVQAQC 1088
Fly 1089 VCEAPLMRRCLNGGSPRYGENDVCDCIDGFTGPHCELVSVAFYGSGYAFYEPIAACNNTKISLEI 1153
Fly 1154 TPQIDQGLIMYLGPLNFNPLLAISDFLALELDNGYPVLTVDYGSGAIRIRHQHIKMVADRTYQLD 1218
Fly 1219 IILQRTSIEMTVDNCRLSTCQTLG--APIGPNEFLNVNAPLQLGGTPVDLEQLGRQLNWTHVPNQ 1281
Fly 1282 KGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQSVAVAFSFGIDRNFIIAIIVCL-ALLLIILL 1345
Fly 1346 AVVVQKKQKNGWHEKDIDDIRETIINYEDEGGGERDTD-YDLNVLR-----TQPFYEEKLYKD-- 1402
Fly 1403 PHALQGNMRDPNDIPDIADFLGDKKENCDRDVGATTVDDVRHYAYEGDGNSDGSLSSLASCTDDG 1467
Fly 1468 DL--NFDYLSNFGPRFRKLADMYG-EEP 1492 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
shg | NP_476722.1 | Cadherin_repeat | 93..191 | CDD:206637 | |
Cadherin_repeat | 200..292 | CDD:206637 | |||
CA | 332..410 | CDD:214520 | |||
Cadherin_repeat | 417..518 | CDD:206637 | 19/59 (32%) | ||
Cadherin_repeat | 531..619 | CDD:206637 | 29/98 (30%) | ||
Cadherin_repeat | 627..729 | CDD:206637 | 17/101 (17%) | ||
Cadherin_repeat | 736..834 | CDD:206637 | 14/97 (14%) | ||
LamG | 1127..1294 | CDD:238058 | 25/168 (15%) | ||
Cadherin_C | 1358..1489 | CDD:279398 | 48/140 (34%) | ||
Cdh24 | XP_008768930.1 | CA | 70..148 | CDD:214520 | 20/61 (33%) |
Cadherin_repeat | 154..255 | CDD:206637 | 31/103 (30%) | ||
Cadherin_repeat | 264..368 | CDD:206637 | 26/185 (14%) | ||
Cadherin_repeat | 378..475 | CDD:206637 | 31/182 (17%) | ||
Cadherin | 483..577 | CDD:421759 | 27/198 (14%) | ||
Cadherin_C | 625..776 | CDD:395833 | 50/150 (33%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
0 | 0.000 |