DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shg and Cdh24

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:XP_008768930.1 Gene:Cdh24 / 498515 RGDID:1560161 Length:781 Species:Rattus norvegicus


Alignment Length:1068 Identity:220/1068 - (20%)
Similarity:354/1068 - (33%) Gaps:414/1068 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   458 FTIDPNTGNITALTTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKNDHKPHF 522
            |.||..||||....:.||||:..|.:...|.|.:      :..|......|.|.:.|.||:.|.|
  Rat    92 FVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRA------SNRPLEPPSEFIIKVQDINDNPPVF 150

  Fly   523 QQDKYLAERLLEDANTNTEVIEVKAEDED-----NASQILYSIESGNVGDAFKIGLKTGKI-TVN 581
            ....|.| .:.|.:|..|.||:|.|.|.|     |:::::|::..|.  ..|.:..:||.: |..
  Rat   151 PLGPYHA-TVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGL--PFFSVDPQTGVVRTAI 212

  Fly   582 QKLDYETITEYELKVRAFD-----GIYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDDC 640
            ..:|.||..|:.:.::|.|     |.....|||.:.:.|||||||.|.|. |..:::|.......
  Rat   213 PNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTL 277

  Fly   641 ILTVEAYDPDIKDRNADQHIVYSIHQNDGNRWTIDNSGCLRLVKTLDRDPPNGHKNWQVLIKAND 705
            :..::|.|||:.| ||  .:.|||...:|:                        :.:.:...:..
  Rat   278 VGRLKAQDPDLGD-NA--LMAYSILDGEGS------------------------EAFSISTDSQG 315

  Fly   706 EDGVGTTVSTVKEVTVTLKDINDNAPFLINEMPVYWQENRNPGHVVQLQANDYDDTPGAGNFTFG 770
            :||    :.||::                   |:.::..|                    ::||.
  Rat   316 QDG----LLTVRK-------------------PLDFETRR--------------------SYTFR 337

  Fly   771 IDSEATPDIKTKFSMDGDYLHANVQFDREAQKEYFIPIRISDSGVPRQSAVSILHLVIGDVNDNA 835
            :::       |...:|..||......|..:     :.:.:.|:..|.....:..|||:.:     
  Rat   338 VEA-------TNTLIDPAYLRRGPFKDVAS-----VRVAVQDAPEPPAFTQATYHLVVPE----- 385

  Fly   836 MSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQ----FRLNPSTGMITM 896
                          .:||.|.:|::..:|||......:|   ..|||..    |.:.|..|.|..
  Rat   386 --------------NKAPGTLVGQISANDLDSPASPIRY---SILPHSDPEHCFSIEPEDGTIRT 433

  Fly   897 LV---HTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTKEEFISV 958
            .|   ..|...|:|                    ||:..||                        
  Rat   434 AVRLDREARVWYNL--------------------TVLATEL------------------------ 454

  Fly   959 PRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYYAPEKLNGIV 1023
                   |:.:...|:|:::.             |:.:|:|               ||:      
  Rat   455 -------DSSAQSSRVQVAIQ-------------TLDENDN---------------APQ------ 478

  Fly  1024 AQNQQRLENELDLQMLMVNIDECLIEKFKCEESCTNELHKSSVPYMIYSNTTSFVGVNAFVQAQC 1088
                  |....||              |.|:.:...:|.:     :|.:.....||.::.|..| 
  Rat   479 ------LAEPYDL--------------FVCDSAAPGQLIQ-----VIRALDRDEVGNSSQVSLQ- 517

  Fly  1089 VCEAPLMRRCLNGGSPRYGENDVCDCIDGFTGPHCELVSVAFYGSGYAFYEPIAACNNTKISLEI 1153
                                        |..||.... :|.....|.|           .:.|..
  Rat   518 ----------------------------GPVGPDANF-TVRDNRDGSA-----------SLLLPS 542

  Fly  1154 TPQIDQGLIMYLGPLNFNPLLAISDFLALELDNGYPVLTVDYGSGAIRIRHQHIKMVADRTYQLD 1218
            .|          .|....|.|.             |:...|:|..|:                  
  Rat   543 RP----------APPRQAPYLV-------------PIELWDWGQPAL------------------ 566

  Fly  1219 IILQRTSIEMTVDNCRLSTCQTLG--APIGPNEFLNVNAPLQLGGTPVDLEQLGRQLNWTHVPNQ 1281
                .::..:||..||   ||..|  ||..|.        .||..|                   
  Rat   567 ----SSTATVTVSVCR---CQPDGSRAPCWPE--------AQLSPT------------------- 597

  Fly  1282 KGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQSVAVAFSFGIDRNFIIAIIVCL-ALLLIILL 1345
                                                      |:....::||:.|: .||.:::|
  Rat   598 ------------------------------------------GLSTGALLAIVTCMGTLLALVVL 620

  Fly  1346 AVVVQKKQKNGWHEKDIDDIRETIINYEDEGGGERDTD-YDLNVLR-----TQPFYEEKLYKD-- 1402
            .|.::::::......:.:|:||.||.|:||||||.||: :|:..|:     ..|.....:.:|  
  Rat   621 FVALRRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDITALQNPDGAAPPAAGPPVRRDVL 685

  Fly  1403 PHALQGNMRDPNDIPDIADFLGDKKENCDRDVGATTVDDVRHYAYEGDGNSDGSLSSLASCTDDG 1467
            |.........|....|:|..|..:....|.|......|.|:.|.|||.|:|.||||||.|.::.|
  Rat   686 PRTRAPRQPRPPGPADVAQLLALRLREADEDPSVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEAG 750

  Fly  1468 DL--NFDYLSNFGPRFRKLADMYG-EEP 1492
            .:  ..:.|.::||.||.||::|| :||
  Rat   751 GVPGPAEPLDDWGPLFRTLAELYGAKEP 778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520
Cadherin_repeat 417..518 CDD:206637 19/59 (32%)
Cadherin_repeat 531..619 CDD:206637 29/98 (30%)
Cadherin_repeat 627..729 CDD:206637 17/101 (17%)
Cadherin_repeat 736..834 CDD:206637 14/97 (14%)
LamG 1127..1294 CDD:238058 25/168 (15%)
Cadherin_C 1358..1489 CDD:279398 48/140 (34%)
Cdh24XP_008768930.1 CA 70..148 CDD:214520 20/61 (33%)
Cadherin_repeat 154..255 CDD:206637 31/103 (30%)
Cadherin_repeat 264..368 CDD:206637 26/185 (14%)
Cadherin_repeat 378..475 CDD:206637 31/182 (17%)
Cadherin 483..577 CDD:421759 27/198 (14%)
Cadherin_C 625..776 CDD:395833 50/150 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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