DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and Cad99C

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_001189311.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster


Alignment Length:1389 Identity:312/1389 - (22%)
Similarity:528/1389 - (38%) Gaps:374/1389 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 RRLIPARLLLGVIVAISLLSPALALHSPPDKNFSGDNRKPAFKNCAGYAPKVKEEQPENTYVL-T 109
            :|.||      :||.:|            |.|   || .|.|.| ..|...|.|..|..|.:. .
  Fly   123 KRTIP------IIVRVS------------DIN---DN-APRFMN-TPYEVTVPESTPVGTTIFRN 164

  Fly   110 VEAVDPDP--DQVIRYSIVQ-SP----FER------PKFFIN-PSTGVIFTTHTFDRDEPIHEKF 160
            ::|:|.|.  :.::.|.|.: ||    .|:      ..|.|: |..|.:....|.|     .||.
  Fly   165 IQALDKDAGVNGLVEYFIAEGSPNSTNVEKYSADGYGTFAISFPHQGQVTVAKTLD-----FEKI 224

  Fly   161 --VFVTVQATD---NGLPPLDDVCTFNVTIEDINDNAPAF--------NKARYDESMSENAQPDA 212
              .::|:.|:|   |....|....|..|.|.|.||..|:|        :.|..:...|.:....:
  Fly   225 QTYYLTIVASDRARNTADRLSSTTTLTVNIADSNDLDPSFIYSGCVSLDGACINPEYSASVPAGS 289

  Fly   213 V--VMT-----ISASDFDDGNNSLVEYEI---LRERDFQYFKIDKESGIIYLKRPIDKRPGQSYA 267
            :  |:|     |.|.|.|. .||.:.|..   :......||:||:.:|::...:.:|....:.|.
  Fly   290 LLGVLTVLPERIQAVDLDT-INSPIRYSFASGMPGNYADYFQIDESTGVLKQTKAVDTSTAKKYD 353

  Fly   268 IIVRAYNVVPDPPQ--DAQIEVRIRVVESSIKPPSFVNPIDTPIYLKEN-------LKNFTHPIA 323
            |||:|..|.|.|.:  .|::|:.::.|:::   |..::......|:.||       |....:||:
  Fly   354 IIVKAEEVSPGPQRFTTAKLEIFVKPVDAN---PPVISSSQAEGYVDENSPIGTRVLDAHGNPIS 415

  Fly   324 TLRAVSNMPD---KPEVIFELNTGRTEQTNSKNTFVFNQIGNEVTISLGKTLDYE--AITDYTLT 383
            .:...:::.|   ||:.|:||.|..           ||..|:.:.:...:.||.:  |...:...
  Fly   416 FMTTDADLSDSDPKPDYIYELTTPS-----------FNVTGDGILVVNEENLDRDPPAPGRFKFQ 469

  Fly   384 MIVR--NTHELGTEHQIKIQVEDVNDNIPYYTEVKSGTILE-NEPPGTPVMQVRAFDMDGTSANN 445
            ::.|  .|:.......:.:.:.|||||.|....|...:|.. ::.....|.||.|.|.| ...|.
  Fly   470 VVAREPRTNAASAPLSLTVHLRDVNDNAPKLAMVAPISITAGDQSESRLVTQVTATDND-EGPNA 533

  Fly   446 IVSFEL---ADNR-EYFTIDPNTGNITALTTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQ 506
            :|::.:   ::|. :.|||:..||.|.........|:  |::.|.|:|....|         ...
  Fly   534 VVTYSIYHVSNNGIQKFTINATTGEIRTQGRLLAGEQ--YSITVQATDIGGLS---------SQA 587

  Fly   507 VFRISI-GDKNDHKPHFQQDKYLAERLLEDANTNTEVIEVKAEDEDNASQILYSIESGNVGDAFK 570
            :..:|: ...|...|.||:..|..: :.|.|..|:.|..|.|||.:| ..::|||.|||....|.
  Fly   588 IVEVSVTPGPNTKPPRFQKPIYEVQ-VSEGAEINSTVTVVHAEDPEN-DAVVYSIISGNDLRQFA 650

  Fly   571 IGLKTGKITVNQKLDYETITEYELKVRAFD-GIYDDYTTVVIKIEDVNDNPPVFKQD---YSVTI 631
            :|.::|.|.|.:|||.|::|.|:|.::|.| |......||.||:.|:||..|.|:..   | |..
  Fly   651 VGQESGVIIVIRKLDRESLTRYQLILKAEDTGGLSSSATVNIKVTDINDKNPEFEASTLPY-VFQ 714

  Fly   632 LEETTYDDCILTVEAYDPDIKDRNADQHIVYSIHQNDGNRWTID-NSGCLRLVKTLDRDPPNGHK 695
            :||......:..|.|.|.| :..||:  |.|||..:  ..:||: .||.:...|.||.:..|.:|
  Fly   715 VEEGKAQASVGVVHATDAD-EGINAE--ITYSIPTD--IPFTINATSGEILTAKELDYEQLNEYK 774

  Fly   696 NWQVLIKAND---EDGVGTTVSTVKEVTVTLKDINDNAP-FLINEMPVYWQENRNPGHVVQLQAN 756
               .::.|.|   :..:||.     .|||.:.|:.|..| |....:.|:..||.....|..:||.
  Fly   775 ---FVVTAKDGAPDARLGTA-----SVTVMVLDLPDEVPKFSDARIDVHIPENEENFLVATVQAF 831

  Fly   757 DYDDTP------GAGNFTFGIDSEATPDIKTKFSMDGDYLHANVQFDREAQKEYFIPIRISDSGV 815
            |.|..|      ..||......||.:.:::|   :.|        .|.|:||::           
  Fly   832 DPDSMPEITYVLRKGNAELFKVSEKSGEVRT---IKG--------LDYESQKQH----------- 874

  Fly   816 PRQSAVSILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDL 880
                     .|.||.:.::....|.:.:.:.                      |:||:    .||
  Fly   875 ---------QLTIGTIENDGNGPGDTILLVV----------------------DVEDR----NDL 904

  Fly   881 PHDQFRLNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSI 945
            |.                         .|:...|.:.|   :.|..:..::..||  |:|..|:.
  Fly   905 PP-------------------------RFITVPDPVTV---NDDQGIGTIIATLP--AIDGDGTS 939

  Fly   946 RFINVTKEEFI---SVPRDFQ-SPD--ALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDV 1004
            .. ||.:.|.:   ..|:.|| .||  |:.::|.|:..                  ::..:.:|:
  Fly   940 PG-NVVRYEIVGRGKAPKYFQVDPDTGAVRIRDELRKE------------------EDTEYQVDI 985

  Fly  1005 RFSAHGSPYYAPEKLNGIV------------AQNQQRLENELDLQMLMVNIDECLIEKFKCEESC 1057
            |....|.|     :|:.:.            ..|:.:|:|:|:....|            ..||.
  Fly   986 RAYDLGEP-----QLSSVAPLRVDVHHLLSSGNNEIKLDNKLESGTGM------------SSESI 1033

  Fly  1058 ----TNELHKSSVPYMIYSNTTSFVGVNAFVQAQCVCEAPLMRRCLNGGSPRYGENDVCDCIDGF 1118
                :::.:.:|||..:.:|:|  :.:...|.::...:.|...|              |:.:.|.
  Fly  1034 GLAFSDDSYTTSVPESMEANST--LKLIQIVNSKTSGDGPPAFR--------------CEFVSGN 1082

  Fly  1119 TGPHCELVSVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNFNPLLAISDFLALE 1183
            .|....| |.|.:|......:|:...|.:..||::.....:..:        |||   .|..::|
  Fly  1083 GGGIFNL-SSADHGCNLLLIQPLDFENKSSYSLQLRLTSHRYFV--------NPL---KDTTSVE 1135

  Fly  1184 LDNGYPVLTVDYGSGAIRIRHQHIKMVADRTYQLDIILQRTSIEMTVDNCRLSTCQTLGAPIGPN 1248
                  ::..|....|.......::...|..|  .::.:...::.|:                  
  Fly  1136 ------IIVQDENDNAPEFEFNRLRGQQDTFY--TVVTEEMDVDTTI------------------ 1174

  Fly  1249 EFLNVNAPLQLGGTPVDLEQLGRQLNWTHVPNQKGFFGCIRNLTINEQTYNLGMPSVF--RNIDS 1311
                    ||:..|..|                .|.||.:|....::....:.||:.|  .:.|:
  Fly  1175 --------LQVRATDRD----------------SGKFGTVRYTLYDDDENRVNMPTSFFMMSEDT 1215

  Fly  1312 GCQQSVAVAFSFGIDRNFIIAIIV 1335
            |.   :..|..|..:.:|.:..:|
  Fly  1216 GV---LRTAKHFKNENDFPLTFLV 1236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 31/117 (26%)
Cadherin_repeat 200..292 CDD:206637 26/103 (25%)
CA 332..410 CDD:214520 20/84 (24%)
Cadherin_repeat 417..518 CDD:206637 24/106 (23%)
Cadherin_repeat 531..619 CDD:206637 36/88 (41%)
Cadherin_repeat 627..729 CDD:206637 31/105 (30%)
Cadherin_repeat 736..834 CDD:206637 22/103 (21%)
LamG 1127..1294 CDD:238058 25/166 (15%)
Cadherin_C 1358..1489 CDD:279398
Cad99CNP_001189311.1 Cadherin_repeat <68..138 CDD:206637 8/35 (23%)
Cadherin_repeat 146..259 CDD:206637 30/117 (26%)
Cadherin_repeat 280..383 CDD:206637 27/103 (26%)
Cadherin_repeat 393..496 CDD:206637 24/113 (21%)
Cadherin_repeat 518..594 CDD:206637 22/87 (25%)
Cadherin_repeat 608..699 CDD:206637 36/92 (39%)
Cadherin_repeat 710..802 CDD:206637 31/105 (30%)
Cadherin_repeat 814..903 CDD:206637 26/145 (18%)
Cadherin_repeat 915..1005 CDD:206637 23/118 (19%)
Cadherin_repeat 1041..1144 CDD:206637 25/136 (18%)
Cadherin_repeat 1159..1264 CDD:206637 19/125 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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