DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and Cad89D

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_650554.3 Gene:Cad89D / 42006 FlyBaseID:FBgn0038439 Length:2240 Species:Drosophila melanogaster


Alignment Length:1524 Identity:301/1524 - (19%)
Similarity:488/1524 - (32%) Gaps:597/1524 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 YAPKVKEEQPENTYVLTVEAVDPD--PDQVIRYSIVQSPFERPKFFINPSTG--VIFTTHTFDRD 153
            |...:.|..|....||.|.|||.|  .:....|::|::......|.|:..||  .:......||:
  Fly   416 YNISIVENLPTGFSVLQVNAVDRDQGENSEFLYNLVETKDAAGAFRIDSRTGWITVRDDRLLDRE 480

  Fly   154 EPIHEKFVFVTVQATDNGLPPLDD---------VCTFNVTIEDINDNAPAFNKAR-YDESMSENA 208
            :   .:.:.:.|:|.:.....|||         .....:|:.|.|||.|.|.... |:..:..||
  Fly   481 Q---RRSIQLNVEALERNPSYLDDKHLKKPGPSKVQVEITLLDTNDNTPKFEHGNLYEFKVPINA 542

  Fly   209 QPDAVVMTISASDFDDGNNSLVEYEILRERDFQY--FKIDKESGIIYLKRPIDKRPGQSYAIIVR 271
            ....|:..:.|.|.|:|.|..:.||:.|.:...|  |::|.::|.||:..|:  |.|: .|:.|.
  Fly   543 PTGYVIGQVVAHDPDEGPNGHLLYELQRPKGSGYIPFRLDNKNGTIYVGGPL--RRGR-IAVFVE 604

  Fly   272 AYNVVPDPPQDAQ-------IEVRIRVVESSI----KPPSFVNPIDTP----------------- 308
            |.: .|..|.:.:       |||...:.:.:|    .|..|....:||                 
  Fly   605 ATD-QPTNPSERRFSLAVITIEVYATIDDQAIDFVGAPYEFWVGANTPLGTSVGQVRTTLIYEGG 668

  Fly   309 --------------------------------------IYLKENLKNF--------------THP 321
                                                  :|..|.:.|:              :.|
  Fly   669 DEIMYDLLHTYSEGVPFAIEERSGIITVIRELSEFKRKVYQFEAVANYLFANSSQSLVMSRSSSP 733

  Fly   322 IATLRAVSNMPD--------------KPE-------VIFELN----------------------- 342
            :.|:.:.:.:.|              |||       ||.|:|                       
  Fly   734 LTTIASPAELSDEGVLITNLTIHIVNKPEQKVPLRPVIEEINMNVIHFHVEENVVGGIIGQLLYK 798

  Fly   343 ---------------------------------TGRTEQTNSKNT---------------FVFNQ 359
                                             ..|:..:.||..               .:.||
  Fly   799 NGINLVNNELGTYREMPSEPTSRNITMGSRFRSRNRSRSSKSKRRLPRRLVGDANIKLRYIIANQ 863

  Fly   360 --IGNEVTISLGKT------LDYEAITDYTLTMIVRNTHELGTE---HQIKIQVEDVNDNIPYYT 413
              :.|:::|:...|      ||.|....|.||:||..:..|.:.   :|:.|:|:|||||.|.:.
  Fly   864 QEVVNKISITEDGTLLTLTGLDREQQPSYELTVIVEYSTGLVSGAGIYQVNIKVDDVNDNAPKFN 928

  Fly   414 EVK-SGTILENEPPGTPVMQVRAF---DMD-------------------------GTSANNIVS- 448
            .:. .|.|.||...||.:....|.   |.|                         |||:.|... 
  Fly   929 ALTYVGLINENCVVGTELSMNHAILIQDADEGPNAEFRVQLQGDYSDEFSIEYVNGTSSENSTHH 993

  Fly   449 -----------FELAD--NRE---------------------YFTIDPNTGNITALTTFDREERD 479
                       |.|.|  |.|                     ||.|     :.|.....|||::.
  Fly   994 KMPSTTGAFNIFNLTDQWNDEFKYQELHTTFMQTNFKLSSGPYFRI-----SYTGKRGLDREKQQ 1053

  Fly   480 FYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKNDHKPHFQQ------------------DK 526
            .||:|:||:|....|         |:....:.:.|.||:.|.|::                  :.
  Fly  1054 LYNLKIIAADTGGLS---------GYAHLTVLVADVNDNAPMFERISVFKDSRLEIREYTTDMEI 1109

  Fly   527 YLAE------------------------------------------------------------- 530
            |..|                                                             
  Fly  1110 YFVESSSGMTAPQATAAMMLAPPPYHIPGSPRFNVDRERSVGAGLGVVARAKSRRRMVRALTTKC 1174

  Fly   531 ---RLLEDANTNTEVIEVKAEDEDNASQIL--YSIESGNVGDA-------------FKIGLKTGK 577
               .:.||....|:|:::.|.|||.....|  |.::...|...             |.|...:|:
  Fly  1175 PLFAIYEDTPVGTKVLQLSASDEDFGKNALLHYELQGEQVERTPGMPMLRVHGVKYFAIDKLSGE 1239

  Fly   578 ITVNQKLDYETITEYELKVRAFDGIYDDYTTVVIKIEDVNDNPPVFKQDYSVTILEETTYDDCIL 642
            ::||..|.........|.|...||:.|. |.:...:.|||::.|.||:.:......|..|.|.:|
  Fly  1240 LSVNYPLSANIEIMLNLTVTDIDGLKDS-TCLRFTVMDVNNHAPTFKKSWYSFDTPEGEYKDSVL 1303

  Fly   643 -TVEAYDPDIKDRNA-------DQHIVYSIHQNDGNRWTIDNSGCLRLVKTLDRDPPNGHKNWQV 699
             .:.|.|.|..: ||       |.|:.::|.         ..||.|::...|||:..:.: ::||
  Fly  1304 GQLTAIDMDFGE-NANITYTLSDSHLPFTIK---------PASGVLKIGGQLDRELKDKY-SFQV 1357

  Fly   700 LIKANDEDGVGTTVSTVKEVTVTLKDINDNAPFLIN-------------------EMPV---YWQ 742
            :  |.|...|...:|:..:|.|.:.|||||.|..|.                   .:||   |..
  Fly  1358 I--ATDNAPVMQRMSSSVDVEVNVLDINDNRPEFIGYDDQTKAVKFIPSVADRTLMLPVYKAYLD 1420

  Fly   743 ENRNPGHVV-QLQANDYDDTPGAGNF--------------TFGIDS-EATPDIKTKFSMDGDYLH 791
            .:..||..| ||.|.|.|:. |.||.              .|.||| :.|....::.:...||.|
  Fly  1421 RSTQPGTFVRQLTAIDKDNV-GNGNGLVLYSIRHQEMQAPLFQIDSRDGTISTISRINGYNDYEH 1484

  Fly   792 ANVQFDREAQKEYFIPIRISDSGVPRQSAVSILHLVIGDVNDNAMSE-----------GSSRIFI 845
            .||.            :..||.|.|..||.:|   ||.::...|:::           .:..:|.
  Fly  1485 LNVS------------VIASDVGSPALSATAI---VIVNLQGQAVTDPPKSTPKPEPPANVTVFQ 1534

  Fly   846 YNY-------KGEAP----------------------------ETDIGRVFVDDLDDWDLED--- 872
            :.|       ..|||                            |||....|     ::|.::   
  Fly  1535 HAYYEVKLTENNEAPIEVMRLNLSAGLNPENYRWSLWLEEGLDETDAHPPF-----EYDAKNMLL 1594

  Fly   873 ---KYFEWKDLPHDQFRLNP-------------------------STGMITMLVHTAEGEYD--- 906
               |.|:.:.:...|.|:..                         |.....:|||.|: |.|   
  Fly  1595 YALKPFDREHISRYQLRIRADRLSREARNYARVSYPVVDERIEGLSLNECRILVHIAD-ENDNAP 1658

  Fly   907 --------LSFVVTEDSMF------VPRHSVDAYVTVVVRE--LPEEA----VDK-SGSIRFI-N 949
                    :..|:.:.:.|      |..:.:|..:...:|.  |.|.|    :|: ||:||.: .
  Fly  1659 KFRGNGQPIVAVLPQSASFGYPVTRVEANDLDEGLNAEIRYRLLNEPARLFGIDELSGNIRLLGE 1723

  Fly   950 VTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYY 1014
            :::.|.| ...|.::.|.:...|.         .:.:.||.|:.:    |....||....|.|..
  Fly  1724 LSRTEHI-YGFDVKATDRMGADDG---------RSGIVNVFVYII----NEAKQVRLVVAGMPVE 1774

  Fly  1015 APEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCE-ESCTNELHKSSVPYMIYSNTTSFV 1078
            ...::.|::......:..::.::         |:|.:... |..||     :..|.:..:|.|.:
  Fly  1775 VERRIEGLMEALSDAIGKDVRVR---------LLEPYSGGLEPATN-----AYIYAVDPHTNSIM 1825

  Fly  1079 GVNAFVQAQCVCE---APLMRRCLNGGSP 1104
            .:.....|....:   ..|.::.|:||.|
  Fly  1826 EMEQLQDALAGLQLDALQLQQQKLDGGKP 1854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 26/110 (24%)
Cadherin_repeat 200..292 CDD:206637 29/100 (29%)
CA 332..410 CDD:214520 33/180 (18%)
Cadherin_repeat 417..518 CDD:206637 35/163 (21%)
Cadherin_repeat 531..619 CDD:206637 26/102 (25%)
Cadherin_repeat 627..729 CDD:206637 29/109 (27%)
Cadherin_repeat 736..834 CDD:206637 33/116 (28%)
LamG 1127..1294 CDD:238058
Cadherin_C 1358..1489 CDD:279398
Cad89DNP_650554.3 Cadherin_repeat 183..290 CDD:206637
Cadherin_repeat 325..407 CDD:206637
Cadherin_repeat 416..524 CDD:206637 26/110 (24%)
Cadherin_repeat 534..626 CDD:206637 27/95 (28%)
Cadherin_repeat 641..>714 CDD:206637 6/72 (8%)
CA 851..925 CDD:214520 22/73 (30%)
CA 1026..1085 CDD:214520 18/72 (25%)
Cadherin_repeat 1177..1280 CDD:206637 26/103 (25%)
Cadherin_repeat 1289..1385 CDD:206637 29/108 (27%)
Cadherin_repeat 1414..1510 CDD:206637 32/111 (29%)
CA 1576..1658 CDD:214520 16/87 (18%)
Cadherin_repeat 1666..1760 CDD:206637 21/107 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464694
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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