DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and fat1a

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:XP_021324881.1 Gene:fat1a / 406172 ZFINID:ZDB-GENE-050425-1 Length:4666 Species:Danio rerio


Alignment Length:1962 Identity:421/1962 - (21%)
Similarity:682/1962 - (34%) Gaps:679/1962 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 IVAISLLSPALALHSPPDKNFSGDNRKPAFKNCAGYAPKVKEEQPENTYVLTVEAVDPDPDQV-- 120
            ||.::::|          .||    ..|.| |...|..::.|..|..|.|...:|.|.|....  
Zfish  2498 IVKVNVIS----------ANF----HNPTF-NQVDYVVELLENSPVGTLVAEAQATDDDSGTYGR 2547

  Fly   121 IRYSIVQSPFERPKFFINPSTGVIFTTHTFDRDEPIHEKFVFVTVQATDNGLPPLDDVCTFNVTI 185
            :.|.|| :...:.||.|: ..|.|||..:.||:..: ||.:.:::.|.|.|  .....||.||.:
Zfish  2548 LTYHIV-NDIAKDKFSIS-ENGEIFTLESLDRENAL-EKVIPISLIAKDGG--GKVGFCTVNVIL 2607

  Fly   186 EDINDNAPAFNKARYDESMSENAQPDAVVMTISASDFDDGNNSLVEYEILRERD--FQYFKIDKE 248
            .|||||||.|..|.|..:::.:......::.|:|||.|:|:|:.:.|.|..:.|  .:.|:|.:.
Zfish  2608 TDINDNAPQFRAADYRVNVASDVSRGTTILKIAASDMDEGSNADITYSIETDADNVEENFEIHQF 2672

  Fly   249 SGIIYLKRPIDKRPGQSYAIIVRAYNVVPDPPQDAQIEVRIRVVESSIKPPSFVNPIDTPIYLKE 313
            ||:|..|..:.....|.|..:|||.: ..:|.:.:.:.|.::::...:..|.|:.. .....::|
Zfish  2673 SGVIVTKESLIGLENQMYTFLVRAKD-GGNPTKSSVVPVYVKILAPEVPVPKFIES-HYRFAIEE 2735

  Fly   314 NLKNFTHPIATLRAVSNMPDKPEVIFELNTGRTEQTNSKNTFVFNQIGNEVTISLGKTLDYEAIT 378
            :| :....|..::|.|:.|    |.:.|..|.|.::|....||.:.  :..::.|.|.||:|:..
Zfish  2736 DL-SLGSEIDVIQAESDQP----VFYSLVKGNTPESNQDEVFVVDP--SSGSLKLDKKLDHESTK 2793

  Fly   379 DYTLTMIVRNTHE---------------------------------------------------- 391
            .|.||:..::.:|                                                    
Zfish  2794 WYQLTLQAQSEYEGSKVVSAVDISIQVKDVNDNRPLFESNPYEAFVVENLPGGTSVIQVKATDLD 2858

  Fly   392 ---------------------------------------------------LGTEHQIKIQ---- 401
                                                               |.|:...|:|    
Zfish  2859 SGTNGHVVYNLDPNQETRDIVELFAINSESGWITTLKELDRETRNKYTVSVLATDRGDKVQLMAS 2923

  Fly   402 ------VEDVNDNIPYYT-EVKSGTILENEPPG-------------------------------- 427
                  |.|||||.|.:| |:..||:.|::|||                                
Zfish  2924 TRVDVTVVDVNDNPPKFTAEIYKGTVSEDDPPGGVIAILSTTDLDTEENNKQISYFITGGDPLGQ 2988

  Fly   428 ----------------------------------------------------------------- 427
                                                                             
Zfish  2989 FAIEHTQGEWKVSVRKPLDREEKDNYLLNITATDGTFTAKAVVEVKVLDANDNSPICEKSFYMES 3053

  Fly   428 ----TP----VMQVRAFDMDGTSANNIVSFE-LADNREYFTIDPNTGNITALTTFDREERDFYNV 483
                :|    ::||.|.|.| ..:|..:|:| |....|:|:||..||.:..|...||||.:.:.:
Zfish  3054 VPEDSPAGRLILQVSATDAD-IRSNAQISYELLGPGSEHFSIDSETGELKTLLPLDREEEEVHKM 3117

  Fly   484 KVIA-------------------SDNSPS--------SLFDNGEPN------------------- 502
            ||.|                   :||.|.        ::|:|.|.|                   
Zfish  3118 KVRALDGGGRFCEAEVEITVEDVNDNPPQFTTDPYTFTVFENTEINTPVARLYASDLDTGANAEI 3182

  Fly   503 -------------------------------------------RG-------HQVFRISIGDKND 517
                                                       ||       |....:||.|.||
Zfish  3183 LYSLLDSADGVFSIEEETGVVRLDRPLDRELQSLYTLRAQATDRGSPRHLSSHTTVSVSILDIND 3247

  Fly   518 HKPHFQQDKYLAERLLEDANTNTEVIEVKA--EDEDNASQILYSIESGNVGDAFKIGLKTGKITV 580
            :.|.|::.:|.| .:.||....|:|:.:.|  .|.:..::|.|:|.:||...||::..:||.:.|
Zfish  3248 NPPVFERREYTA-TVAEDIPVGTQVLRIHAASRDTEAGTEITYAIINGNERGAFRVDPQTGGVFV 3311

  Fly   581 NQKLDYETITEYELKVRAFDG---IYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDDCI 641
            .:.|||||..|:.|.|.|.||   ...|..||.|.:.|||||.|||.|| ||..|.|:......:
Zfish  3312 IEPLDYETAHEFYLTVEATDGGTPSLSDLATVNINLTDVNDNSPVFNQDIYSAVISEDAELGKTV 3376

  Fly   642 LTVEAYDPDIKDRNADQHIVYSIHQNDGNRWTIDN-SGCLRLVKTLDRDPPNGHKNWQVLIKAND 705
            |||.|.|.|....|..:..:  |..|.|:.:|||. .|.:::.:.|||:..:|   :.:.:.|:|
Zfish  3377 LTVMADDADGPSSNQVRFSI--IDGNQGSPFTIDPVRGEVKVARLLDREKTSG---YTLTVLASD 3436

  Fly   706 EDGVGTTVSTVKEVTVTLKDINDNAP-FLINEMPVYWQENRNPG-HVVQLQANDYDDTPGAGNFT 768
            ......:.|..  :.|.:.|||||.| |......:..|||:..| .|:||..:|.|.:.....||
Zfish  3437 NGSPARSSSAT--INVDVSDINDNPPIFSQANYSIIIQENQPIGASVLQLTVSDRDASHNGPPFT 3499

  Fly   769 FGIDSEATPDIKTKFSMDGDYLHANVQ--------FDREAQKEYFIPIRISDSGVPRQSAVSILH 825
            |.|       |:   ..:||:.....|        ..|:.|:.|.:..:::|||.|...:.:.:.
Zfish  3500 FSI-------IR---GNEGDFFRITPQGVLVSAATLSRQTQEFYLLQAQVTDSGRPPLVSTAFVS 3554

  Fly   826 LVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQ------ 884
            :.:.:.:....|.....|||.....|.....:|::...|.|.:|.    ..:...|...      
Zfish  3555 VRLIEESIYPPSILPLDIFITTATDEYSGGVLGKIHATDQDVYDT----LTYSLAPDSSSTSENS 3615

  Fly   885 --FRLNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRF 947
              |.::|:.|.:....:...|:|.|:..||:.     |.:..|.|.:.||:...:|:|.|.::||
Zfish  3616 GLFSVSPADGKLVARGNLDAGQYVLNITVTDG-----RFTAAARVNIHVRQATAQALDNSIAVRF 3675

  Fly   948 INVTKEEFISVPRDFQSPDALSLKD-----RLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFS 1007
            ..:..||||.   |:......:|::     |..:.|..|...:.::.|:..:|..|.        
Zfish  3676 SAIAPEEFIG---DYWRNFLRALRNIAGVRRGDVQLVSLQPAADASGDLEVLLALER-------- 3729

  Fly  1008 AHGSPYYAPE----KLNGIVAQNQQRLENEL--DLQMLMVNIDECLIEKFKCEESCTNELHKSSV 1066
             .|||:...|    |||..|...::.....:  .::.|...:| |.:.  .|:|:...|....|.
Zfish  3730 -SGSPFQPQEVLYRKLNASVGVIEEMTGVRIVRVMKKLCAGLD-CPLS--FCQETIALETGAVSA 3790

  Fly  1067 PYMIYSNT-TSFVGVNAFVQAQCVCEAP----LMRRCLNGGSP--------------RYGENDVC 1112
                ||.. .|||.......|:|:||..    |.:.|  .|||              :|.    |
Zfish  3791 ----YSTARISFVTPRHMRTAKCLCEGAECSILSKLC--EGSPCPDGMECVEDPTHSKYR----C 3845

  Fly  1113 DCIDGFTGPHCELVSVAFYGSGYAFYEPIAACN--NTKISLEITPQIDQGLIMYLGPLNFNPLLA 1175
            .|.:|......|..|:.|.|:|||.|..:...|  ..|:||.:........:||...        
Zfish  3846 ICPEGKQEECSERQSLTFSGNGYARYRLMENENKEEMKLSLRLRTFSTHATVMYAKG-------- 3902

  Fly  1176 ISDFLALELDNGYPVLTVDYGSG-------------------AIRIRHQHIKMVAD--------- 1212
             :|:..||:.||......|.|||                   ::.:...:.::|.|         
Zfish  3903 -TDYSILEIVNGRLQYKFDCGSGPGVVSVHSTQVSDGQWHTVSLEVDGNYARLVLDQVHAASGTA 3966

  Fly  1213 ----RTYQLDI----------------------------------------------ILQR---- 1223
                ||..||.                                              :|:.    
Zfish  3967 PGTLRTLNLDTSMYFGGHVRPASGSGRLVMNGLRGCLEGIVFNGRELPLSQVRGAHSVLEELVEA 4031

  Fly  1224 ---TSIEMTVDNCRLSTCQTLGAPIG-PN---------EFLNVNA----------PLQLGGTPVD 1265
               .|:...:..|..:.|...|..:. ||         .|:..:.          |...|||.:.
Zfish  4032 APGCSLAPPIQGCTSNPCTNGGTCLALPNGGYFCKCTAAFMGTHCEVTISPCASNPCLYGGTCIP 4096

  Fly  1266 LE----------------QLGRQLNWTHVPN---------------QKGFFG---------CIRN 1290
            ..                |||.........|               :.||.|         |::|
Zfish  4097 RGGDFYCQCRGQYSGQRCQLGPYCTDNPCKNSGKCIDSLDGPVCECEPGFQGERCLSDVDECLKN 4161

  Fly  1291 LTIN----EQTYNLGMPSVFRNIDSG-----CQ-------QSVAVAFSFGIDRNFIIAIIVCLA- 1338
            ...|    :.||.    |...|..:|     |:       :.|:.:::.|::.  :|.|:|.:| 
Zfish  4162 PCGNGGHCQNTYG----SFSCNCSNGYSGQHCELRSEIRNEFVSTSWNIGLEE--VIGIVVFVAS 4220

  Fly  1339 LLLIILLAVVVQKKQKNGWHEKDIDDIRETIINYEDEGGGERDTDYDLNVLRTQPFYEEKLYKDP 1403
            :..::||.|||:|:.......|..||         |:.|....|.   |....:|:::.||.::.
Zfish  4221 IFFLVLLFVVVRKRICRRSKSKSDDD---------DKIGISTGTQ---NSFLHRPYFDAKLNRNI 4273

  Fly  1404 HA---LQGNMRDPNDIPDIADFLGDKKENCDRDVGATTVDDVRHYAYEGDG----------NSD- 1454
            ::   .|..:|..:..|.|.   .|.:.|.||:            ::||..          |.| 
Zfish  4274 YSDIPPQVPVRPISYTPSIP---SDSRNNLDRN------------SFEGSAIPEHPEFSTFNPDS 4323

  Fly  1455 --GSLSSLASCT 1464
              |...::|.|:
Zfish  4324 VHGHRKTVAVCS 4335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 32/99 (32%)
Cadherin_repeat 200..292 CDD:206637 24/93 (26%)
CA 332..410 CDD:214520 27/190 (14%)
Cadherin_repeat 417..518 CDD:206637 44/302 (15%)
Cadherin_repeat 531..619 CDD:206637 34/92 (37%)
Cadherin_repeat 627..729 CDD:206637 29/102 (28%)
Cadherin_repeat 736..834 CDD:206637 24/106 (23%)
LamG 1127..1294 CDD:238058 49/313 (16%)
Cadherin_C 1358..1489 CDD:279398 25/123 (20%)
fat1aXP_021324881.1 Cadherin_repeat 36..142 CDD:206637
Cadherin_repeat 152..251 CDD:206637
E_set 272..353 CDD:324323
Cadherin_repeat 369..457 CDD:206637
Cadherin_repeat 465..563 CDD:206637
Cadherin_repeat 574..662 CDD:206637
Cadherin_repeat 721..816 CDD:206637
Cadherin_repeat 824..921 CDD:206637
Cadherin_repeat 930..1026 CDD:206637
Cadherin_repeat 1041..1133 CDD:206637
Cadherin_repeat 1141..1239 CDD:206637
Cadherin_repeat 1261..1342 CDD:206637
Cadherin_repeat 1361..1473 CDD:206637
Cadherin_repeat 1482..1579 CDD:206637
Cadherin_repeat 1587..1683 CDD:206637
Cadherin_repeat 1692..1782 CDD:206637
Cadherin_repeat 1795..1895 CDD:206637
Cadherin_repeat 1905..1990 CDD:206637
Cadherin_repeat 2004..2098 CDD:206637
Cadherin_repeat 2106..2196 CDD:206637
Cadherin_repeat 2208..2300 CDD:206637
Cadherin_repeat 2309..2407 CDD:206637
Cadherin_repeat 2415..2507 CDD:206637 3/18 (17%)
Cadherin_repeat 2518..2613 CDD:206637 32/99 (32%)
Cadherin_repeat 2622..2715 CDD:206637 24/93 (26%)
Cadherin_repeat 2728..2826 CDD:206637 22/104 (21%)
Cadherin_repeat 2834..>2915 CDD:206637 2/80 (3%)
Cadherin_repeat 2944..3041 CDD:206637 6/96 (6%)
Cadherin_repeat 3050..3143 CDD:206637 24/93 (26%)
Cadherin_repeat 3151..3248 CDD:206637 11/96 (11%)
Cadherin_repeat 3256..3353 CDD:206637 36/97 (37%)
Cadherin_repeat 3361..3458 CDD:206637 29/103 (28%)
Cadherin_repeat 3467..3558 CDD:206637 24/100 (24%)
Cadherin_repeat 3583..3659 CDD:206637 16/84 (19%)
LamG 3883..4011 CDD:214598 20/136 (15%)
EGF_CA 4044..4077 CDD:238011 6/32 (19%)
EGF_CA 4080..4115 CDD:238011 4/34 (12%)
EGF 4120..4150 CDD:306513 4/29 (14%)
EGF_CA 4154..4190 CDD:238011 8/39 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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