DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and kug

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster


Alignment Length:1452 Identity:355/1452 - (24%)
Similarity:592/1452 - (40%) Gaps:295/1452 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 QQTHQQHKRKCRDLGRRLIPARLLLGVIVAISLLSPALALHSPP--DKNFSGDNRKPAFKNCAGY 93
            |||..:.:::..:|            ::||.:...|....::..  |.....|| .|.|.| ..|
  Fly  2815 QQTLDREQQESHNL------------IVVAETSTVPVFFAYADVLIDVRDENDN-YPKFDN-TFY 2865

  Fly    94 APKVKEEQPENTYVLTVEAVDPD--PDQVIRYSI------VQSPFERPKFFINPSTGVIFTTHTF 150
            :..|.|...:...::.|.|.|.|  |:..|||.:      :|:.|:     |:..:|.|....:.
  Fly  2866 SASVAENSEKVISLVKVSATDADTGPNGDIRYYLESDTENIQNIFD-----IDIYSGWITLLTSL 2925

  Fly   151 DRDEPIHEKFVFVTVQATDNGLPPLDDVCTFNVTIEDINDNAPAFNKARYDESMSENAQPDAVVM 215
            ||:  :..::.|..: |.|||.|..|......:.|.|.|||||.|.......|:.|||.|..|::
  Fly  2926 DRE--VQSEYNFKVI-AADNGHPKHDAKVPVTIKIVDYNDNAPVFKLPIEGLSVFENALPGTVLI 2987

  Fly   216 TISASDFDDGNNSLVEYEILRERDFQYFKIDKESGIIYLKRPIDKRPGQSYAIIVRAYNVVPDPP 280
            .:...|.|.....:..:.:..::..| |:|.| ||.:::.:|:|:.....|.:.:    :..|..
  Fly  2988 NLLLIDPDIEKQEMDFFIVSGDKQAQ-FQIGK-SGELFIAKPLDREQLMFYNLSI----IATDGK 3046

  Fly   281 QDAQIEVRIRVVESSIKPPSFVNPIDTPIYLKENLKNFTHPIATLRAVS---NMPDKPEVIFELN 342
            ..|:..|.|.|.:        :|. :||..||..     :.|:|..::|   .:.:...:.|:..
  Fly  3047 FTAKANVEIDVKD--------IND-NTPYCLKPR-----YHISTNESISIGTTLVEVKAIDFDFQ 3097

  Fly   343 TGRTEQTNSKNTFVFNQIGNEVTI-SLGKTLDYEAITDYTLTMIVRNTHELGTE--HQIKIQVED 404
            :......:.|....|: ||.|..| .:...||.|....|.|...|::..:...|  .:|.|.|.|
  Fly  3098 SKLRFYLSGKGADDFS-IGKESGILKVASALDRETTPKYKLVAHVQDGKDFTQECFSEIIITVND 3161

  Fly   405 VNDNIPYYTEVK-SGTILENEPPGTPVMQVRAFDMDGTSANNIVSFEL-ADNREYFTIDPNTGNI 467
            :|||:|.::..: ..::.|:....|.:.:|.|.|.| ...|..:.:.| .:|.:||.|..:||.|
  Fly  3162 INDNMPIFSMAQYRVSVPEDAQLNTLITKVHAMDKD-FGVNRQIKYSLMGENHDYFKISKSTGII 3225

  Fly   468 TALTTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIG--DKNDHKPHFQQDKYLAE 530
            ....:.|||....:|:.|.|.|.....|         |.:..:::.  |.||:.|.|...:|.. 
  Fly  3226 RLHKSLDRETISLFNLTVKAEDCGVPKL---------HSIATVAVNILDINDNPPEFSMRQYSC- 3280

  Fly   531 RLLEDANTNTEVIEVKAEDED---NASQILYSIESGNVGDAFKIGLKTGKITVNQKLDYETITEY 592
            ::||:|...|||.:|.|...|   || .|.|.|.|||....||:...||.:.:|..||||....|
  Fly  3281 KILENATHGTEVCKVYATSIDIGVNA-DIHYFIMSGNEQGKFKMDSTTGDLVLNATLDYEMSKFY 3344

  Fly   593 ELKVRAFDG---IYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDDCILTVEAYDPDIKD 653
            .|.::|.||   ...:...|.|.|.|:|||.|.|.|: |.:.:.|:......||.|:|.|   :|
  Fly  3345 FLTIQAIDGGTPPLSNNAYVNISILDINDNSPTFLQNLYRINVNEDIFVGSKILDVKATD---ED 3406

  Fly   654 RNADQHIVYSIHQNDG-NRWTID-NSGCLRLVKTLDRDPPNGHKNWQVLIKANDEDGVGTTVSTV 716
            .:.:..:.|:|.:.|. .:::|| .:|.:.:.:.|||:..:   ::.:.|:|.|: |.....::|
  Fly  3407 SDVNGLVTYNIERGDNIGQFSIDPKNGTISVSRPLDRETIS---HYTLEIQACDQ-GDPQRCNSV 3467

  Fly   717 KEVTVTLKDINDNAP-FLINEMPVYWQENRNPGHV-VQLQANDYDDTPGAGNFTFGIDSEATPDI 779
             .:.:.:.|.||||| |..:...|..||||..|:| :..:.:|.|:||....:||.|.|.....:
  Fly  3468 -PININILDTNDNAPIFSSSNYSVVLQENRLLGYVFLTFKISDADETPNTTPYTFDIRSGNEGGL 3531

  Fly   780 KTKFSMDGDYLHANVQFDREAQKEYFIPIRISDSGVP--RQSAVSILHLVIG----------DVN 832
             .:...||. |....:|:...|.|:.|.:|:.|:|.|  ...|..::.::..          :|.
  Fly  3532 -FRLEQDGS-LRTASRFNHNLQDEFVIQVRVFDNGTPPLYSDAWVVVKIIEESQYPPIVTPLEVT 3594

  Fly   833 DNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQ------FRLNPST 891
            .|:..:..|..|            ||:|...|.|.:|  :..|.....|.|.      |.::.:|
  Fly  3595 INSFEDDFSGAF------------IGKVHASDQDKYD--ELNFSLVSGPDDMYQSSKLFNISNNT 3645

  Fly   892 GMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTKEEFI 956
            |.|..:.:...|.|.|: |...|..|.....|...|.:|..::.:|:|    .|||..::..||:
  Fly  3646 GKIYAISNLDIGLYKLN-VSVSDGKFHVFSIVKINVELVTNDMLKESV----VIRFRRISASEFL 3705

  Fly   957 SVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNV------DVFTV-LQNE---------------- 998
                               ||..|.|..|:.|:      ||..: ||::                
  Fly  3706 -------------------LSHRKTFMRSIRNIMRCRQKDVILITLQSDYQKASQHAVGNRRARS 3751

  Fly   999 -NHTLDVRFSAH-------GSPYYAPEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKC-E 1054
             :..|:|.|:..       ...::..:::...:...:..:|||.:|.:..|....|...|..| .
  Fly  3752 IDSDLNVVFAVRKQQIIPDSDEFFTSDEIRQTLIDKKNEIENETNLVVEDVLPSTCQSNKNDCVH 3816

  Fly  1055 ESCTN--ELHKSSVPYMIYSNTTSFVGVNAFVQAQ------CVCE-------------------- 1091
            ..|..  ::.|::|       ||:|..|.:|....      |||.                    
  Fly  3817 GECKQILQILKNNV-------TTTFTDVISFAAPSYIPVNTCVCRPGFDGKHCKETVNACSTDPC 3874

  Fly  1092 APLMRRCLNGGSPRYGENDVCDCIDGFTGPHCE---------------LVSVAFYGSGYAFYE-- 1139
            :| .|.|:..||....:   |.|..||:|.:||               ..:|:|.|..||.|:  
  Fly  3875 SP-QRICMPSGSALGYQ---CVCPKGFSGTYCERKSSKCSNESCDMGLFTAVSFGGKSYAHYKIN 3935

  Fly  1140 ----PIAACNNTKISLEITPQIDQGLIMYL-GPLNFNPLLAISDFLALELDNGYPVLTVDYGSGA 1199
                .....|....||:|......|.::|. |.:::|         .||:.||......|.|||.
  Fly  3936 KVKAKFTLENGFSYSLQIRTVQQTGTLLYASGKVDYN---------ILEIINGAVQYRFDLGSGE 3991

  Fly  1200 IRIRHQHIKMVADRTYQLDIILQRTSIEMTVDNCRLSTCQTLGAPIGPNEFLN-------VNAPL 1257
            ..|....|.:.....:|:.:.....|.::.|||..:|.    |:..|.|..||       |.|.:
  Fly  3992 GVISVSSINISDGEWHQISLERSLNSAKVMVDNKHVSH----GSAPGVNGILNIQSNDIFVGAEV 4052

  Fly  1258 QLGGTPVDLEQLGRQLNWTHVPNQKGFFGCIRNLTINEQT---YNLGMPSV-----FRNIDSGCQ 1314
            :...:.:..|.:           |:||.||:.|:.|.:::   |..|..::     |.|::..|.
  Fly  4053 RPHPSIIGYEDI-----------QRGFIGCMANIKIAKESLPLYISGGSTIAALKRFTNVEFKCD 4106

  Fly  1315 QSVAVAFSFGIDRNFIIAIIVC 1336
            .|           |.::.:.:|
  Fly  4107 PS-----------NVLVRLGIC 4117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 28/105 (27%)
Cadherin_repeat 200..292 CDD:206637 21/91 (23%)
CA 332..410 CDD:214520 21/80 (26%)
Cadherin_repeat 417..518 CDD:206637 26/103 (25%)
Cadherin_repeat 531..619 CDD:206637 36/93 (39%)
Cadherin_repeat 627..729 CDD:206637 24/103 (23%)
Cadherin_repeat 736..834 CDD:206637 28/110 (25%)
LamG 1127..1294 CDD:238058 44/180 (24%)
Cadherin_C 1358..1489 CDD:279398
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
E_set 309..390 CDD:298831
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637
Cadherin_repeat 776..873 CDD:206637
Cadherin_repeat 883..976 CDD:206637
Cadherin_repeat 984..1082 CDD:206637
Cadherin_repeat 1092..1189 CDD:206637
Cadherin_repeat 1197..1295 CDD:206637
Cadherin_repeat 1303..1386 CDD:206637
Cadherin_repeat 1413..1502 CDD:206637
Cadherin_repeat 1510..1608 CDD:206637
Cadherin_repeat 1621..1713 CDD:206637
Cadherin_repeat 1724..1811 CDD:206637
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637
Cadherin_repeat 2658..2759 CDD:206637
Cadherin_repeat 2774..2856 CDD:206637 8/52 (15%)
Cadherin_repeat 2865..2963 CDD:206637 28/105 (27%)
Cadherin_repeat 2974..3063 CDD:206637 23/103 (22%)
Cadherin_repeat 3072..3165 CDD:206637 22/93 (24%)
Cadherin_repeat 3173..3269 CDD:206637 26/105 (25%)
Cadherin_repeat 3277..3374 CDD:206637 37/98 (38%)
Cadherin_repeat 3383..3479 CDD:206637 24/103 (23%)
Cadherin_repeat 3488..3579 CDD:206637 27/92 (29%)
Cadherin_repeat 3590..3681 CDD:206637 24/105 (23%)
EGF_CA 3866..3903 CDD:238011 10/40 (25%)
Laminin_G_2 3953..4077 CDD:280389 35/147 (24%)
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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