DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and CadN2

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster


Alignment Length:1789 Identity:476/1789 - (26%)
Similarity:719/1789 - (40%) Gaps:532/1789 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 TFNVT------IEDINDNAPAFNKARYDESMSENAQPDAVVMTISASDFDDGNNSLVEYEILRER 238
            |:.||      |.|.||:.|.|::..|:..:.|||...:.|:|::|.|.::..|  :.|:|....
  Fly    15 TYLVTKFVRIGIADKNDSPPYFDRFLYETEIDENADLQSTVLTVNAKDHNESTN--IRYQITGGN 77

  Fly   239 DFQYFKIDKESGIIYLKRPIDKRPGQSYAIIVRA-------YNVVPDPPQDAQIEVRIRVVESSI 296
            ....|.:...:|:||:..|:|......|.:.:.|       |..|         .:.:|.|..: 
  Fly    78 IGNAFAVQNTTGVIYVASPLDYETRPRYELRLEATRNRKNNYTTV---------VINVRDVNDN- 132

  Fly   297 KPPSFVNPIDTPIY----LKENLKNFTHPIATLRAVSNMPDKPEVIFELNTGR----TEQTNSKN 353
             ||.|    |...|    .:|:.:|....|..:.|.....|:|..|....||:    ....||| 
  Fly   133 -PPVF----DRQTYRTQITEEDDRNLPKRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANSK- 191

  Fly   354 TFVFNQIGNEVTISLGKTLDYE---AITDYTLTMIVRNTHELGTEHQIKIQV--EDVNDNIPYYT 413
             |..|:...::.:.  |.||.:   ....:..|:..::....|......|||  :|:|||.|.:.
  Fly   192 -FDINRTTGDIFVL--KPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLKDINDNAPQFP 253

  Fly   414 E-VKSGTILENEPPGTPVMQVRAFDMD----GTSANNIVSFELADNRE-----YFTIDPNTGNI- 467
            : :..|.:.||...|:.||.:.|.|.|    .|:|..|.|.|.....|     .|.|:|.||.| 
  Fly   254 QGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIK 318

  Fly   468 TALTTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKNDHKPHFQQDKYLAERL 532
            ||:...|||....|:::|:|.|         |...:|.....|.:.|.||..|.|.:|:::.|  
  Fly   319 TAVCCLDRERTPDYSIQVVAMD---------GGGLKGTGTASIRVKDLNDMPPQFTKDEWVTE-- 372

  Fly   533 LEDAN----TNTEVIEVKAEDEDNASQILYSI--ESGNVGDAFKI---GLKTGKITVNQKLDYET 588
            :::.|    ..|.::.|..:|||..:...|.:  .||...|.|.:   |..||.:.:.|.||||.
  Fly   373 VDETNGTYIPETPILTVTVQDEDETNTFQYKVVPNSGFGADKFAMVRNGDGTGSLKIIQPLDYED 437

  Fly   589 ITE---YELKVRAFD-GIYDD-----------YTTVVIKIEDVNDNPPVFKQDY-SVTILEETTY 637
            ..:   :..:::..| |  ||           |:.||:|:.|:|||.|.|.::: .|:|.|:|..
  Fly   438 PLQSSGFRFRIQVNDKG--DDGPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKV 500

  Fly   638 DDCILTVEAYDPDIKDRNADQHIVYSI--HQNDGNRWTIDNSGCLRLVKTLDRDPPNGHKNWQVL 700
            ...:...:|.|   .|:.....:.|.|  ..|...::.|.:.|.:.:.:.|||:..:.|   .:.
  Fly   501 GTILEQFKATD---ADQGGHSKVAYKIVRSTNRKRQFAISDRGAVSIQRPLDRETQDRH---HIQ 559

  Fly   701 IKANDEDGVGTTVSTVKEVTVTLKDINDNAPFLINEMPVYWQENRNPGHVVQLQANDYDD--TPG 763
            |.|.|:.....|.:..  :||.:||:|||||....:......||.:...::::.|.|.||  ...
  Fly   560 ILAIDDGSPARTATAT--LTVIVKDVNDNAPTFAQDYKPTLPENVSGKKILEVAAKDPDDRLRGN 622

  Fly   764 AGNFTFGIDSEATPDIKTKFSMDGDYLHANVQ----------FDREAQKEYFIPIRISDSGVPRQ 818
            .|.|||.:|..|:.:||..|.::.|....|..          |||||||.|.|||.|.|:|.|..
  Fly   623 GGPFTFRLDPLASDEIKAGFKVEYDRRGDNENGVAIISSLRPFDREAQKSYAIPIEIKDNGAPAM 687

  Fly   819 SAVSILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHD 883
            :..|.|.:.|||||||.|..||..:.:|||:|::.:|.||||:|:|.||||:.||.:.|:...|.
  Fly   688 TGTSTLTVTIGDVNDNKMQPGSKSVLVYNYQGQSQDTPIGRVYVNDPDDWDVPDKKYYWEVQEHQ 752

  Fly   884 QFRLNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFI 948
            :|:|:..||::||...|..|.|.|.|.|.:...  .:..:.|.::|.||::..|||.::||:|..
  Fly   753 RFKLDTDTGILTMRAGTRRGRYQLRFKVYDREH--GQEDIPANLSVTVRDITAEAVQQAGSMRLS 815

  Fly   949 NVTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENH---TLDVRFSAHG 1010
            ::|.|:|:......::....|..:|.:..||:|..|...|||||:|...|..   ..||.|:|..
  Fly   816 HITDEDFVRTWNPVKNQVEPSKLERFRNKLAELLYTDRDNVDVFSVQLKEGSPYPLTDVHFAARS 880

  Fly  1011 S---PYYAPEKLNGIVAQNQQRLENELDLQMLMVNIDECLIE-KFKC-EESCTNELHKSSVPYMI 1070
            :   ||:...:|||:|..:::.:|.::.|.:.||||:|||.| |.|| ..|||:::.....||.:
  Fly   881 ATQQPYFKAVRLNGVVQMHREEIEKDVGLNITMVNINECLHEGKGKCGSNSCTSKVELGKKPYTV 945

  Fly  1071 YSNTTSFVGVNAFVQAQCVCEAPLMRR---------CLNGG---SPRYGENDVCDCIDGFTGPHC 1123
            ..|.|:.|||...:.|||||.|.....         |.|||   ..|.|...|. |..|:.||.|
  Fly   946 SVNRTALVGVRLDISAQCVCRARNFTHQDHNCRTHLCYNGGRCVETRNGPKCVA-CPVGYNGPRC 1009

  Fly  1124 ELVSVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNFNPL---LAISDFLALELD 1185
            :..:.:|.|:|:|:|.|:..|..:.:|||...::..|||:|.||: ..|.   ..||||:||||:
  Fly  1010 QQSTRSFRGNGWAWYPPLQLCQESHLSLEFITRVADGLILYNGPI-VPPKPEETVISDFIALELE 1073

  Fly  1186 NGYPVLTVDYGSGAIRIRHQHIKMVADRT-YQLDIILQRTSIEMTVDNCRL-------------- 1235
            .|||.|.:|:|||.:.:|.:..|.:.|.. ::|||.....::.|.||.||.              
  Fly  1074 QGYPRLLIDFGSGTLELRVKTKKTLDDGVWHRLDIFWDTENVRMVVDFCRTALVSEMEDGTPPEF 1138

  Fly  1236 --STCQTLGAPIGP-NEFLNVNAPLQLGGTPVDLEQLGRQ------LNWTHVPNQKGFFGCIRNL 1291
              :.||..| .|.| .|.||:|.||||||       |.||      .||.:..:.|||.|||||:
  Fly  1139 DDNACQARG-QIPPFAESLNLNQPLQLGG-------LYRQHFDQTLYNWQYAFSSKGFDGCIRNV 1195

  Fly  1292 TINEQTYNLGMPSVFRNIDSGCQQS---------------------------------------- 1316
            ..|.:.|:|..|::.||....|.|:                                        
  Fly  1196 IHNSEHYDLAFPALARNSFPACPQTDEVCLKTEHTARCWEHGNCVASLVQAKCHCQPGWMGPGCN 1260

  Fly  1317 ----------------------------------------------------------------- 1316
                                                                             
  Fly  1261 VPTIPTTFKAQSYVKFALSFEPDRFSTQLQLRFRTREQGGELFRVSDQHHREYAILELRRGHLQF 1325

  Fly  1317 ----------------VAVAFSFG----------------------------------------- 1324
                            .|:|.:.|                                         
  Fly  1326 RYNLNSMRNEEQLLTLTAIAVNDGQWHVIRISRYGSAALMELDGGESRRYNESFHFTGHQWLTID 1390

  Fly  1325 ----------------------------------------------------------------- 1324
                                                                             
  Fly  1391 KQEGVYAGGKAEYTGIKTFEVQSDFQRSCLDDIRLDGKHLPLPPAMNGTQWGQATMARNLERNCP 1455

  Fly  1325 ----------------------------------------IDRNFII------------------ 1331
                                                    :|||..:                  
  Fly  1456 SNRPCSNVICPDPFDCVDLWNEYECTCSEGRIMSSDTKGCVDRNECLDLPCLNGATCINLEPRLR 1520

  Fly  1332 -------------------------------AIIVCLALLLIILLAVVV-------QKKQKNGWH 1358
                                           ||.|||.::||:.|..|:       .||:|....
  Fly  1521 YRCICPEGYWGENCELVQEGQRLKLSMGALGAIFVCLIIILILALIFVLYSRKRKTTKKKKRSGP 1585

  Fly  1359 EKDIDDIRETIINYEDEGGGERD-TDYDLNVLRTQPFYEEKLYKDPHALQGNMRD---------- 1412
            ||   |:|||:|:||||||||.| |.:|:..|:.           |.:.||...|          
  Fly  1586 EK---DVRETVISYEDEGGGEDDMTAFDITPLQI-----------PISAQGGPPDIAACKMPIIY 1636

  Fly  1413 -------PNDIPDIADFLGDKKENCDRDVGATTVDDVRHYAYEGDGNSDGSLSSLASCTDDGDLN 1470
                   |....::|..:.::|:..|:|..|...||:|::.:||.|:...|||||||.|||.:.:
  Fly  1637 PVMTLLPPGQELNVAYLMEERKQRIDKDNNAPPFDDLRNFTFEGSGSIAESLSSLASGTDDENQD 1701

  Fly  1471 FDYLSNFGPRFRKLADMYGEEPSDTDSNVDDDQG 1504
            |:||.|:||||..||.||..:.:...|.:..|.|
  Fly  1702 FNYLQNWGPRFNALAAMYVHDKAKASSQLPSDGG 1735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 6/16 (38%)
Cadherin_repeat 200..292 CDD:206637 22/98 (22%)
CA 332..410 CDD:214520 22/86 (26%)
Cadherin_repeat 417..518 CDD:206637 35/110 (32%)
Cadherin_repeat 531..619 CDD:206637 29/111 (26%)
Cadherin_repeat 627..729 CDD:206637 25/104 (24%)
Cadherin_repeat 736..834 CDD:206637 39/109 (36%)
LamG 1127..1294 CDD:238058 72/193 (37%)
Cadherin_C 1358..1489 CDD:279398 56/148 (38%)
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 23/101 (23%)
Cadherin_repeat 140..248 CDD:206637 25/111 (23%)
Cadherin_repeat 256..359 CDD:206637 34/111 (31%)
Cadherin_repeat 379..481 CDD:206637 28/103 (27%)
Cadherin_repeat 489..586 CDD:206637 25/104 (24%)
Cadherin_repeat 594..703 CDD:206637 39/108 (36%)
Cadherin_repeat 724..801 CDD:206637 31/78 (40%)
EGF_CA 977..1010 CDD:238011 11/33 (33%)
LamG 1013..1198 CDD:238058 72/193 (37%)
EGF_2 <1233..1259 CDD:285248 0/25 (0%)
Laminin_G_2 1293..1428 CDD:280389 3/134 (2%)
EGF_CA 1497..1535 CDD:238011 3/37 (8%)
Cadherin_C 1583..1719 CDD:279398 55/149 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464700
Domainoid 1 1.000 70 1.000 Domainoid score I6225
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D3586at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.850

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