DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and Cdh10

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_001303687.1 Gene:Cdh10 / 320873 MGIID:107436 Length:788 Species:Mus musculus


Alignment Length:1183 Identity:246/1183 - (20%)
Similarity:361/1183 - (30%) Gaps:564/1183 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   370 KTLDYEAITDYTLTMIVRNTHEL---GTEHQIKIQVEDVNDNIPYY-TEVKSGTILENEPPGTPV 430
            :.:|.|....|||.....|...|   ..|.:..|::.|:|||.|.: .|:.:.::.|....||.|
Mouse   115 RRIDREEKAFYTLRAQAINRRTLRPVEPESEFVIKIHDINDNEP
TFPEEIYTASVPEMSVVGTSV 179

  Fly   431 MQVRAFDMDGTSANNI--VSFELADNREYFTIDPNTGNI-TALTTFDREERDFYNVKVIASDNSP 492
            :||.|.|.|..|..|.  |.:.:...:.||:::|.||.| |||...:||.::.|.|.:.|.|.  
Mouse   180 VQVTATDADDPSYGNSARVIYSILQGQPYFSVEPETGIIRTALPNMNRENKEQYQVVIQAKDM-- 242

  Fly   493 SSLFDNGEPN--RGHQVFRISIGDKNDHKPHFQQDKYLAERLLEDANTNTEVIEVKAEDEDNA-- 553
                 .|:..  .|.....|::.|.||:.|.|.|:. :..|:||.:...|.|..|||.|.|..  
Mouse   243 -----GGQMGGLSGTTTVNITLTDVNDN
PPRFPQNT-IHLRVLESSPVGTAVGSVKATDADTGKN 301

  Fly   554 SQILYSIESGNVGDAFKI----GLKTGKITVNQKLDYETITEYELKVRA----------FDGIYD 604
            :::.|.|..|:..|.|.|    ..:.|.|||.:.||||....|.|||.|          :.|.:.
Mouse   302 AEVDYRIIDGDGTDMFDIITEKDTQEGIITVKKPLDYENRRLYTLKVEAENTHVDPRFYYLGPFK 366

  Fly   605 DYTTVVIKIEDVNDNPPVF-KQDYSVTILEETTYDDCILTVEAYDPD--------IKDRNADQHI 660
            |.|.|.|.|||| |.|||| :..|...:.|:......|.||.|.|||        ..||:.|...
Mouse   367 DTTIVKISIEDV-DE
PPVFSRSSYLFEVHEDIEVGTIIGTVMARDPDSTSSPIRFTLDRHTDLDR 430

  Fly   661 VYSIHQNDGNRWTIDNSGCLRLVKTLDRDPPNGHKNWQVLIKANDEDGVGTTVSTVKEVT----- 720
            :::||..:|:.:|         .|.|||:....| |..|         :...::..||.|     
Mouse   431 IFNIHSGNGSLYT---------SKPLDRELSQWH-NLTV---------IAAEINNPKETTRVSVF 476

  Fly   721 VTLKDINDNAPFLINEMPVYWQ----ENRNPGHVVQ-LQANDYDDTPGAGNFTFGIDSEATPDIK 780
            |.:.|:|||||    :..|::.    ||..||.::| :.|.|.||..|...|.|.:.:       
Mouse   477 VRILDVNDN
AP----QFAVFYDTFVCENARPGQLIQTISAVDKDDPLGGQKFFFSLAA------- 530

  Fly   781 TKFSMDGDYLHANVQFDREAQKEYFIPIRISDSGVPRQSAVSILHLVIGDVNDNAMSEGSSRIFI 845
                                                                             
Mouse   531 ----------------------------------------------------------------- 530

  Fly   846 YNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQFRLNPSTGMITMLVHTAEGEYDLSFV 910
                                                     :||:                    
Mouse   531 -----------------------------------------VNPN-------------------- 534

  Fly   911 VTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTKEEFISVPRDFQSPDALSLKDRLQ 975
                                                                             
Mouse   535 ----------------------------------------------------------------- 534

  Fly   976 LSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYYAPEKLNGIVAQNQQRLENELDLQMLM 1040
                            |||..||::|..:                                    
Mouse   535 ----------------FTVQDNEDNTARI------------------------------------ 547

  Fly  1041 VNIDECLIEKFKCEESCTNELHKSSVPYMIYSNTTSFVGVNAFVQAQCVCEAPLMRRCLNGGSPR 1105
                                                                 |.|:        
Mouse   548 -----------------------------------------------------LTRK-------- 551

  Fly  1106 YGENDVCDCIDGFTGPHCELVSVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNF 1170
                      :||                          |..:||..:.|               
Mouse   552 ----------NGF--------------------------NRHEISTYLLP--------------- 565

  Fly  1171 NPLLAISDFLALELDNGYPVLTVDYGSGAIRIRHQHIKMVADRTYQLDIILQRTSIEMTVDNCRL 1235
               :.||       ||.||:                               |.::..:|:   |:
Mouse   566 ---VVIS-------DNDYPI-------------------------------QSSTGTLTI---RV 586

  Fly  1236 STCQTLGAPIGPNEFLNVNAPLQLGGTPVDLEQLGRQLNWTHVPNQKGFFGCIRNLTINEQTYNL 1300
            ..|.:.|                                                          
Mouse   587 CACDSQG---------------------------------------------------------- 593

  Fly  1301 GMPSVFRNIDSGCQQSVAVAFSFGIDRNFIIAIIVCLALLLIILLAVVVQKKQKNGWHEKD---- 1361
                   |:.| | .:.|:....|:....:|||::|:.:||:|::.....|:|:    :|:    
Mouse   594 -------NMQS-C-SAEALLLPAGLSTGALIAILLCIIILLVIVVLFAALKRQR----KKEPLIL 645

  Fly  1362 -IDDIRETIINYEDEGGGERDTD-YDLNVLRTQPFYEE-KLYKD--PHALQGNMRDPN--DIPDI 1419
             .:|||:.|::|.||||||.||. :|:..||.....|| ||.:|  |..|....|.|.  |..|:
Mouse   646 SKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPAAIEEKKLRRDIIPETLFIPRRTPTAPDNTDV 710

  Fly  1420 ADFLGDKKENCDRDVGATTVDDVRHYAYEGDGNSDGSLSSLASCTDDGDLNFDYLSNFGPRFRKL 1484
            .||:.::.:..|.|..|...|.:..|||||:.:...|||||.|.|.:||.|:|||..:||||.||
Mouse   711 RDFINERLKEHDLDPTAPPYDSLATYAYEGNDSVAESLSSLESGTTEGDQNYDYLREWGPRFNKL 775

  Fly  1485 ADMYGEEPSDTDS 1497
            |:|||...||.|:
Mouse   776 AEMYGGGESDKDA 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520 13/42 (31%)
Cadherin_repeat 417..518 CDD:206637 32/105 (30%)
Cadherin_repeat 531..619 CDD:206637 38/103 (37%)
Cadherin_repeat 627..729 CDD:206637 29/114 (25%)
Cadherin_repeat 736..834 CDD:206637 13/102 (13%)
LamG 1127..1294 CDD:238058 15/166 (9%)
Cadherin_C 1358..1489 CDD:279398 60/141 (43%)
Cdh10NP_001303687.1 CA 80..158 CDD:214520 13/42 (31%)
Cadherin_repeat 164..265 CDD:206637 32/107 (30%)
Cadherin_repeat 273..380 CDD:206637 38/108 (35%)
Cadherin_repeat 388..485 CDD:206637 29/115 (25%)
Cadherin_repeat 493..587 CDD:206637 37/499 (7%)
Cadherin_C 643..780 CDD:279398 59/136 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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