DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shg and Cdh18

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_001074768.1 Gene:Cdh18 / 320865 MGIID:1344366 Length:790 Species:Mus musculus


Alignment Length:1182 Identity:231/1182 - (19%)
Similarity:344/1182 - (29%) Gaps:565/1182 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   370 KTLDYEAITDYTL--TMIVRNTHE-LGTEHQIKIQVEDVNDNIPYYTEVKSG----TILENEPPG 427
            |:||.|..|.|.|  ..|.|.|:: |..|.:..|:|:|:|||.|.:|:   |    |:.|....|
Mouse   114 KSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAP
KFTD---GPYIVTVPEMSDMG 175

  Fly   428 TPVMQVRAFDMD----GTSANNIVSFELADNREYFTIDPNTGNI-TALTTFDREERDFYNVKVIA 487
            |.|:||.|.|.|    |.||.  |.:.:...:.||::||.||.| |||...|||.|:.|:|.:.|
Mouse   176 TSVLQVTATDADDPTYGNSAR--VVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQA 238

  Fly   488 SDNSPSSLFDNGEPN--RGHQVFRISIGDKNDHKPHFQQDKYLAERLLEDANTNTEVIEVKAEDE 550
            .|.:       |:..  .|.....|::.|.||:.|.|.| |:....:.|.|...:.|.::||.|.
Mouse   239 KDMA-------GQVGGLSGSTTVNITLTDVNDN
PPRFPQ-KHYQLYVPESAQVGSAVGKIKANDA 295

  Fly   551 DNAS--QILYSIESGNVGDAFKIG----LKTGKITVNQKLDYETITEYELKVRAFD--------- 600
            |..|  .:.|||.:|:....|.|.    .:.|.:::.:.|:||....|.|.:...:         
Mouse   296 DTGSNADMTYSITNGDGIGVFSISTDKDTREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSH 360

  Fly   601 -GIYDDYTTVVIKIEDVNDNPPVFKQ-DYSVTILEETTYDDCILTVEAYDPDIKDRNADQHIVYS 663
             |.:.|.|.:.:.:.|| |.||:|.. .|.:.:.|.......:.||.|.|||    :|:..:.|.
Mouse   361 LGPFKDATMLKVIVGDV-DE
PPLFSMPSYVMEVYENAKIGTIVGTVLAQDPD----SANSLVRYF 420

  Fly   664 I-HQNDGNR-WTID-NSGCLRLVKTLDRDPPNGHKNWQVLIKANDEDGVGTTVSTVKEVTVTLKD 725
            | |..:..| :.|| |:|.::..|.|||:....: |..|....||...:.:.||    |.:.:.|
Mouse   421 INHSTEEERFFNIDANTGTIKTSKVLDREETPWY-NITVTASENDNPDLLSHVS----VGIRVLD 480

  Fly   726 INDNAPFLINEMPVYWQENRNPGHVVQ-LQANDYDDTPGAGNFTFGIDSE--ATPDIKTKFSMD- 786
            :|||.|.|..|..:...||..||.|:. :.|.|.||......|.|.:|..  ..|:...|.:.| 
Mouse   481 VNDN
PPELAREYDIVVCENSKPGQVIHTITATDKDDFANGPRFHFFLDERLPMNPNFTLKDNEDN 545

  Fly   787 -GDYLHANVQFDREAQKEYFIPIRISDSGVPRQSAVSILHLVIGDVNDNAMSEGSSRIFIYNYKG 850
             ...|....:|.|..|..|::||.|||.|:|..|:.|                            
Mouse   546 TASILTRRRRFSRTMQDVYYLPIMISDGGIPSLSSSS---------------------------- 582

  Fly   851 EAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQFRLNPSTGMITMLVHTAEGEYDLSFVVTEDS 915
                                                                             
Mouse   583 ----------------------------------------------------------------- 582

  Fly   916 MFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTKEEFISVPRDFQSPDALSLKDRLQLSLAK 980
                                                                             
Mouse   583 ----------------------------------------------------------------- 582

  Fly   981 LFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYYAPEKLNGIVAQNQQRLENELDLQMLMVNIDE 1045
                                ||.:|.                                       
Mouse   583 --------------------TLTIRV--------------------------------------- 588

  Fly  1046 CLIEKFKCEESCTNELHKSSVPYMIYSNTTSFVGVNAFVQAQCVCEAPLMRRCLNGGSPRYGEND 1110
                                                      |.||.                  
Mouse   589 ------------------------------------------CACER------------------ 593

  Fly  1111 VCDCIDGFTGPHCELVSVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNFNPLLA 1175
                 ||                                                          
Mouse   594 -----DG---------------------------------------------------------- 595

  Fly  1176 ISDFLALELDNGYPVLTVDYGSGAIRIRHQHIKMVADRTYQLDIILQRTSIEMTVDNCRLSTCQT 1240
                                                                      |:.||. 
Mouse   596 ----------------------------------------------------------RVRTCH- 601

  Fly  1241 LGAPIGPNEFLNVNAPLQLGGTPVDLEQLGRQLNWTHVPNQKGFFGCIRNLTINEQTYNLGMPSV 1305
                                                                             
Mouse   602 ----------------------------------------------------------------- 601

  Fly  1306 FRNIDSGCQQSVAVAF--SFGIDRNFIIAIIVCLALLLIILLAVVVQKKQKNGWHEKDIDDIRET 1368
                        |.||  |.|:....:|||::|:.:||.|::..:..::.|........:|:||.
Mouse   602 ------------AEAFLSSAGLSTGALIAILLCVVILLAIVVLFITLRRGKKEPLIISEEDVREN 654

  Fly  1369 IINYEDEGGGERDTD-YDLNVLRTQPFYEEKLYKDPHALQGNMRD--------PN-------DIP 1417
            ::.|:||||||.||: :|:..||.....||..|:         ||        |.       :..
Mouse   655 VVTYDDEGGGEEDTEAFDITALRNPAAAEEFTYR---------RDIRPEVKLTPRHQTLSTLESI 710

  Fly  1418 DIADFLGDKKENCDRDVGATTVDDVRHYAYEGDGNSDGSLSSLASCTDDGDLNFDYLSNFGPRFR 1482
            |:.:|:..:....|.|......|.::.|||||..:..||:|||.|.|...|.::.||.::||.|:
Mouse   711 DVQEFIKQRLAEADLDPSVPPYDSLQTYAYEGQRSEAGSISSLDSATTQSDQDYHYLGDWGPEFK 775

  Fly  1483 KLADMYGEEPSD 1494
            |||::|||..|:
Mouse   776 KLAELYGEIESE 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520 18/42 (43%)
Cadherin_repeat 417..518 CDD:206637 38/111 (34%)
Cadherin_repeat 531..619 CDD:206637 25/103 (24%)
Cadherin_repeat 627..729 CDD:206637 30/104 (29%)
Cadherin_repeat 736..834 CDD:206637 30/102 (29%)
LamG 1127..1294 CDD:238058 3/166 (2%)
Cadherin_C 1358..1489 CDD:279398 47/146 (32%)
Cdh18NP_001074768.1 CA 79..157 CDD:214520 18/42 (43%)
Cadherin_repeat 163..264 CDD:206637 37/109 (34%)
Cadherin_repeat 272..379 CDD:206637 25/107 (23%)
Cadherin_repeat 387..484 CDD:206637 30/105 (29%)
Cadherin_repeat 491..589 CDD:206637 33/356 (9%)
Cadherin_C 637..783 CDD:395833 49/154 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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