DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and Cdh12

DIOPT Version :10

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_001414404.1 Gene:Cdh12 / 301887 RGDID:1566350 Length:794 Species:Rattus norvegicus


Alignment Length:1153 Identity:249/1153 - (21%)
Similarity:385/1153 - (33%) Gaps:456/1153 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   407 DNI-------PYYTEVKSG------TILENEPPGTPVMQVRAFDMDGTSANNIVSFELADN--RE 456
            ||:       .::..||.|      .:|| |..|:....|.....|.......|.:.|:.:  ..
  Rat    37 DNVIHLLGRRSHFQRVKRGWVWNQFFVLE-EYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGT 100

  Fly   457 YFTIDPNTGNITALTTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKNDHKPH 521
            .||||..||:|.|:.:.||||:.||.::..|.|      .:..:|......|.|.:.|.||::|.
  Rat   101 VFTIDETTGDIHAIRSLDREEKPFYTLRAQAVD------IETRKPLEPESEFIIKVQDINDNEPK 159

  Fly   522 FQQDKYLAERLLEDANTNTEVIEVKAEDED-----NASQILYSIESGNVGDAFKIGLKTGKI-TV 580
            |....|:|. :.|.:.....|::|||.|.|     |:::::|||..|.  ..|.|..|||.| |.
  Rat   160 FLDGPYVAS-VPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQ--PYFSIDPKTGVIRTA 221

  Fly   581 NQKLDYETITEYELKVRAFD-----GIYDDYTTVVIKIEDVNDNPPVF-KQDYSVTILEETTYDD 639
            ...:|.|...:|::.::|.|     |.....|.|.|.:.|||||||.| |..:.:.:.|.:....
  Rat   222 LPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPVGS 286

  Fly   640 CILTVEAYDPDIKDRNADQHIVYSIHQND-GNRWTI-----DNSGCLRLVKTLDRDPPNGHKNWQ 698
            .|..:.|.|||. .:||:  |.|:|...| ||.:.|     ...|.::|.|.||.:.   .|.:.
  Rat   287 AIGRIRAVDPDF-GKNAE--IEYNIVPGDGGNLFDIVTDEDTQEGIIKLKKPLDFET---KKAYT 345

  Fly   699 VLIKAND--------EDGVGTTVSTVKEVTVTLKDINDNAPFLINEMPVYWQENRNPGHVVQLQA 755
            ..::|::        ..|.....:|||   :::.|:::...|   ..|:|..|            
  Rat   346 FKVEASNLHLDHRFHSAGPFKDTATVK---ISVLDVDEPPVF---SKPLYTME------------ 392

  Fly   756 NDYDDTPGAGNFTFGIDSEATPDIKTKFSMDGDYLHANVQFDREAQKEYFIPIRISDSGVPRQSA 820
             .|:|||                                                          
  Rat   393 -VYEDTP---------------------------------------------------------- 398

  Fly   821 VSILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQF 885
               :..:||.|....:..|||.:               |.|:|             ||......|
  Rat   399 ---VGTIIGAVTAQDLDVGSSAV---------------RYFID-------------WKSDGDSYF 432

  Fly   886 RLNPSTGMIT---MLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVV-VRELPEEAVDKSGSIR 946
            .::.:.|.|.   :|......:|:.|.:.::.|.......|:..:.|: |.|.|.|         
  Rat   433 TIDGTEGTIATNELLDRENTAQYNFSIIASKVSNPSLTSKVNILINVLDVNEFPPE--------- 488

  Fly   947 FINVTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSV-SNVDVFTVLQNENHTLDVRFSAHG 1010
                     ||||                      :.|:| .|.....::|... .:|...|..|
  Rat   489 ---------ISVP----------------------YETAVCENAKPGQIIQIVG-AVDRDLSPAG 521

  Fly  1011 SPY---YAPEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEESCTNELHKSSVPYMIYS 1072
            ..:   .|||   .::..|                                         :.::.
  Rat   522 QQFSFRLAPE---AVIKPN-----------------------------------------FTVHD 542

  Fly  1073 NTTSFVGVNAFVQAQCVCEAPLMRRCLNGGSPRYGENDVCDCIDGFTGPHCELVSVAFYGSGYAF 1137
            ...:..|:..             ||  ||.|.|..|                             
  Rat   543 FRNNTAGIET-------------RR--NGYSRRQQE----------------------------- 563

  Fly  1138 YEPIAACNNTKISLEITPQIDQGLIMYLGPLNFNPLLAISDFLALELDNGYPVLTVDYGSGAIRI 1202
                                          |.|.|::       :| |:.|||            
  Rat   564 ------------------------------LYFLPIV-------IE-DSSYPV------------ 578

  Fly  1203 RHQHIKMVADRTYQLDIILQRTSIEMTVDNCRLSTCQTLGAPIGPNEFLNVNAPLQLGGTPVDLE 1267
                               |.::..||:..||   |.:.|.                        
  Rat   579 -------------------QSSTNTMTIRVCR---CDSDGT------------------------ 597

  Fly  1268 QLGRQLNWTHVPNQKGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQSVAVAFSFGIDRNFIIA 1332
                            ...|                    |::       |:....|:....:||
  Rat   598 ----------------ILSC--------------------NVE-------AIFLPVGLSTGALIA 619

  Fly  1333 IIVCLALLLIILLAVVVQKKQKNGWHEKDI-----DDIRETIINYEDEGGGERDTD-YDLNVLRT 1391
            |::|:.:||.|::..|..::||    :||.     :|||:.:|:|:||||||.||. :|:..||.
  Rat   620 ILLCIVILLAIVVLYVALRRQK----KKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRN 680

  Fly  1392 QPFYEEK-----LYKDPHALQGNMRDPNDIPDIADFLGDKKENCDRDVGATTVDDVRHYAYEGDG 1451
            ....||.     :..|...|........|..||.||:..:.:..|.|..|...|.:..|||||:|
  Rat   681 PKVIEENKIRRDIKPDSFCLPRQRPQVEDNTDIRDFIHQRLQENDADPAAPPYDSLATYAYEGNG 745

  Fly  1452 NSDGSLSSLASCTDDGDLNFDYLSNFGPRFRKLADMYGEEPSDTDSNV 1499
            :...||||:.|.|.:.|.::||||::||||:.||||:|||.|....||
  Rat   746 SVAESLSSIDSLTSEADQDYDYLSDWGPRFKVLADMFGEEESYNPDNV 793

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520 2/9 (22%)
Cadherin_repeat 417..518 CDD:206637 30/108 (28%)
Cadherin_repeat 531..619 CDD:206637 31/98 (32%)
Cadherin_repeat 627..729 CDD:206637 27/115 (23%)
Cadherin_repeat 736..834 CDD:206637 10/97 (10%)
LamG 1127..1294 CDD:238058 16/166 (10%)
CADH_Y-type_LIR 1430..1489 CDD:460041 29/58 (50%)
Cdh12NP_001414404.1 None
Blue background indicates that the domain is not in the aligned region.

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