DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and Cdh22

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_062034.2 Gene:Cdh22 / 29182 RGDID:2321 Length:813 Species:Rattus norvegicus


Alignment Length:1211 Identity:221/1211 - (18%)
Similarity:350/1211 - (28%) Gaps:575/1211 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 FVFNQIGNEVTISLGKTLDYEAITDYTLTMIVRN---THELGTEHQIKIQVEDVNDNIPYYTE-V 415
            |:.:::..::..:  :.||.|..|.|||....|:   ...|..|.:..|:|:|:||:.|.:.. .
  Rat   107 FLIDELTGDIHAT--ERLDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQDINDSEPRFLHGP 169

  Fly   416 KSGTILENEPPGTPVMQVRAFDMD----GTSANNIVSFELADNREYFTIDPNTGNI-TALTTFDR 475
            ..|::.|..|.||.||||.|.|.|    |:||..:  :.:.|...:||:||.||.| ||:...||
  Rat   170 YIGSVAELSPTGTSVMQVMASDADDPTYGSSARLV--YSVLDGEHHFTVDPKTGVIRTAVPDLDR 232

  Fly   476 EERDFYNVKVIASDNSPSSLFDNGEPN--RGHQVFRISIGDKNDHKPHFQQDKYLAERLLEDANT 538
            |.::.|.|.:.|:|.:       |:..  .|.....|.:.|.||:.|.|.|..|... :.|.|..
  Rat   233 ESQERYEVVIQATDMA-------GQLGGLSGSTTVTIVVTDVNDNPPRFPQKMYQFS-IQESAPI 289

  Fly   539 NTEVIEVKAEDED--NASQILYSI--ESGNVGDAFKI----GLKTGKITVNQKLDYETITEYELK 595
            .|.|..|||||.|  ..:.:.|.:  |||:.|||||:    ..:...|.|.:.||:|:...:.:.
  Rat   290 GTAVGRVKAEDSDVGENTDMTYHLREESGSGGDAFKVTTDSDTQEAIIVVQKHLDFESQQVHTVV 354

  Fly   596 VRAFD----------GIYDDYTTVVIKIEDVNDNPPVFKQDYS-VTILEETTYDDCILTVEAYDP 649
            :.|.:          |.:.|...|.:.:.|| |.||.|:.... :.:.|:......:..|.|.||
  Rat   355 LEALNKFVDPRFADLGTFRDQAIVRVAVTDV-DEPPEFRPPSGLLEVQEDAQVGSLVGVVTARDP 418

  Fly   650 DIK--------DRNADQHIVYSIHQNDGNRWTIDNSGCLRLVKTLDRDPPNGHKNWQVLIKANDE 706
            |..        ||::|...::.|..         ::|.:...|.|||:....| |..||....|.
  Rat   419 DAANRPVRYAIDRDSDLEQIFDIDA---------DTGAIVTGKGLDRETAGWH-NITVLAMEADN 473

  Fly   707 DGVGTTVSTVKEVTVTLKDINDNAPFLINEMPVYWQENRNPGHVVQ-LQANDYDDTPGAGNFTFG 770
            ....:..|    :.:.:.|:|||.|.|.........|:..||.::| :...|.|:..|...|.|.
  Rat   474 HAQLSRAS----LRIRILDVNDNPPELATPYEAAVCEDAKPGQLIQTISVVDRDEPQGGHRFYFR 534

  Fly   771 I--DSEATP-----DIKTKFSMDGDYLHA-NVQFDREAQKEYFIPIRISDSGVPRQSAVSILHLV 827
            :  :..:.|     ||:...:.    :|. :|.|:|:.|..:.:||.:.|||.|..|        
  Rat   535 LVPEEPSNPHFSLLDIEDNTAA----VHTQHVGFNRQEQDVFLLPILVVDSGPPTLS-------- 587

  Fly   828 IGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQFRLNPSTG 892
                                                                          |||
  Rat   588 --------------------------------------------------------------STG 590

  Fly   893 MITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTKEEFIS 957
            .:|:.:.                                      ..|.||:|            
  Rat   591 TLTIRIC--------------------------------------GCDSSGTI------------ 605

  Fly   958 VPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYYAPEKLNGI 1022
                                                                             
  Rat   606 ----------------------------------------------------------------- 605

  Fly  1023 VAQNQQRLENELDLQMLMVNIDECLIEKFKCEESCTNELHKSSVPYMIYSNTTSFVGVNAFVQAQ 1087
                                            :||               |||:||         
  Rat   606 --------------------------------QSC---------------NTTAFV--------- 614

  Fly  1088 CVCEAPLMRRCLNGGSPRYGENDVCDCIDGFTGPHCELVSVAFYGSGYAFYEPIAACNNTKISLE 1152
                                                                             
  Rat   615 ----------------------------------------------------------------- 614

  Fly  1153 ITPQIDQGLIMYLGPLNFNPLLAISDFLALELDNGYPVLTVDYGSGAIRIRHQHIKMVADRTYQL 1217
                                                                             
  Rat   615 ----------------------------------------------------------------- 614

  Fly  1218 DIILQRTSIEMTVDNCRLSTCQTLGAPIGPNEFLNVNAPLQLGGTPVDLEQLGRQLNWTHVPNQK 1282
                                   :.|.:.|..                                 
  Rat   615 -----------------------MAASLSPGA--------------------------------- 623

  Fly  1283 GFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQSVAVAFSFGIDRNFIIAIIVCLALLLIILLAV 1347
                                                           :||::||:.:|:::.|.:
  Rat   624 -----------------------------------------------LIALLVCVLILVVLALLI 641

  Fly  1348 VVQKKQKNGWHEKDID-DIRETIINYEDEGGGERDTD-YDLNVLRTQPFYEEKLYKDP------- 1403
            :..::........|:| |:|:.:|.|.||||||:||: ||::.||:...:.|....||       
  Rat   642 LTLRRHHKSHLSSDVDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGGDPGGGAASP 706

  Fly  1404 ---------HALQGNMRDPNDIPDIA---DFLGDKKENCDRDVGATTVDDVRHYAYEGDGNSDGS 1456
                     |:|......|.  ||.:   ||:..|....|.|:.....|..:.||:||.|:...|
  Rat   707 PQAASSSERHSLPRGPSSPE--PDFSVFRDFISRKVALADADLSVPPYDAFQTYAFEGAGSPAAS 769

  Fly  1457 LSSLASCTDDGDLNFDYLSNFGPRFRKLADMYGEEPSDTDS 1497
            ||||.|.:...:.:|.:|..:|||||.||.:|.....|.::
  Rat   770 LSSLHSGSTGSEQDFAFLRAWGPRFRPLAALYAGHRGDDEA 810

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520 16/57 (28%)
Cadherin_repeat 417..518 CDD:206637 37/107 (35%)
Cadherin_repeat 531..619 CDD:206637 30/105 (29%)
Cadherin_repeat 627..729 CDD:206637 23/110 (21%)
Cadherin_repeat 736..834 CDD:206637 24/106 (23%)
LamG 1127..1294 CDD:238058 2/166 (1%)
Cadherin_C 1358..1489 CDD:279398 52/151 (34%)
Cdh22NP_062034.2 Cadherin_repeat 80..160 CDD:206637 14/54 (26%)
Cadherin_repeat 169..270 CDD:206637 37/109 (34%)
Cadherin_repeat 279..387 CDD:206637 31/109 (28%)
Cadherin_repeat 398..492 CDD:206637 23/107 (21%)
Cadherin_repeat 499..597 CDD:206637 28/171 (16%)
Cadherin_C 645..804 CDD:395833 53/160 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 696..726 4/29 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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