Sequence 1: | NP_476722.1 | Gene: | shg / 37386 | FlyBaseID: | FBgn0003391 | Length: | 1507 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_035930.1 | Gene: | Cdh20 / 23836 | MGIID: | 1346069 | Length: | 801 | Species: | Mus musculus |
Alignment Length: | 1281 | Identity: | 249/1281 - (19%) |
---|---|---|---|
Similarity: | 386/1281 - (30%) | Gaps: | 622/1281 - (48%) |
- Green bases have known domain annotations that are detailed below.
Fly 324 TLRAVSNMPDKPEVIFE-LNTGRTE-QTNSKNTFVFNQI-------------------------- 360
Fly 361 ---------GNEVTISLGKT---------LDYEAITDYTL---TMIVRNTHELGTEHQIKIQVED 404
Fly 405 VNDNIPYYTE-VKSGTILENEPPGTPVMQVRAFDMD----GTSANNIVSFELADNREYFTIDPNT 464
Fly 465 GNI-TALTTFDREERDFYNVKVIASDNSPSSLFDNGEPN--RGHQVFRISIGDKNDHKPHFQQDK 526
Fly 527 YLAERLLEDANTNTEVIEVKAEDEDNA--SQILYSIESGNVGDAFKI----GLKTGKITVNQKLD 585
Fly 586 YETITEYELKVRAFD----------GIYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDD 639
Fly 640 CILTVEAYDPDIKDRNADQHIVYSIHQ--NDGNRWTID-NSGCLRLVKTLDRDPPNGHKNWQVLI 701
Fly 702 KANDEDGVGTTVSTVKEVTVTLKDINDNAPFLINEMPVYWQ----ENRNPGHVVQ-LQANDYDDT 761
Fly 762 PGAGNFTFGIDSEA--TPDIKTKFSMDGD--YLHANVQFDREAQKEYFIPIRISDSGVPRQSAVS 822
Fly 823 ILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQFRL 887
Fly 888 NPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTK 952
Fly 953 EEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYYAPE 1017
Fly 1018 KLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEESCTNELHKSSVPYMIYSNTTSFVGVNA 1082
Fly 1083 FVQAQCVCEAPLMRRCLNGGSPRYGENDVCDCIDGFTGPHCELVSVAFYGSGYAFYEPIAACNNT 1147
Fly 1148 KISLEITPQIDQGLIMYLGPLNFNPLLAISDFLALELDNGYPVLTVDYGSGAIRIRHQHIKMVAD 1212
Fly 1213 RTYQLDIILQRTSIEMTVDNCRLSTCQTLGAPIGPNEFLNVNAPLQLGGTPVDLEQLGRQLNWTH 1277
Fly 1278 VPNQKGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQSVAVAFSFGIDRNFIIAIIVCL-ALLL 1341
Fly 1342 IILLAVVVQKKQKNGWHEKDIDDIRETIINYEDEGGGERDTD-YDL----NVLRTQPFYEEKLYK 1401
Fly 1402 DPHALQGNMRDPNDIPDIADFLGDKKENC-----------------DRDVGATTVDDVRHYAYEG 1449
Fly 1450 DGNSDGSLSSLASCTDDGDLNFDYLSNFGPRFRKLADMYG--EEPS 1493 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
shg | NP_476722.1 | Cadherin_repeat | 93..191 | CDD:206637 | |
Cadherin_repeat | 200..292 | CDD:206637 | |||
CA | 332..410 | CDD:214520 | 28/126 (22%) | ||
Cadherin_repeat | 417..518 | CDD:206637 | 36/107 (34%) | ||
Cadherin_repeat | 531..619 | CDD:206637 | 34/103 (33%) | ||
Cadherin_repeat | 627..729 | CDD:206637 | 28/104 (27%) | ||
Cadherin_repeat | 736..834 | CDD:206637 | 26/106 (25%) | ||
LamG | 1127..1294 | CDD:238058 | 11/166 (7%) | ||
Cadherin_C | 1358..1489 | CDD:279398 | 50/152 (33%) | ||
Cdh20 | NP_035930.1 | CA | 85..163 | CDD:214520 | 15/77 (19%) |
Cadherin_repeat | 169..270 | CDD:206637 | 36/109 (33%) | ||
Cadherin_repeat | 278..385 | CDD:206637 | 34/107 (32%) | ||
Cadherin_repeat | 394..490 | CDD:206637 | 28/104 (27%) | ||
Cadherin_repeat | 498..599 | CDD:206637 | 32/452 (7%) | ||
Cadherin_C | 643..794 | CDD:366437 | 53/162 (33%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S7605 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.860 |