DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and Cdh20

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_035930.1 Gene:Cdh20 / 23836 MGIID:1346069 Length:801 Species:Mus musculus


Alignment Length:1281 Identity:249/1281 - (19%)
Similarity:386/1281 - (30%) Gaps:622/1281 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 TLRAVSNMPDKPEVIFE-LNTGRTE-QTNSKNTFVFNQI-------------------------- 360
            |...:|:.| .|||..| |.:||:: ...||.::|:||.                          
Mouse    29 TATVLSSTP-MPEVELETLFSGRSQSHQRSKRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDG 92

  Fly   361 ---------GNEVTISLGKT---------LDYEAITDYTL---TMIVRNTHELGTEHQIKIQVED 404
                     |..:..::..|         ||.|....|||   .:..|....:..|.:..|:::|
Mouse    93 SIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQD 157

  Fly   405 VNDNIPYYTE-VKSGTILENEPPGTPVMQVRAFDMD----GTSANNIVSFELADNREYFTIDPNT 464
            :|||.|.:.: ....|:.|..|.||.|:||.|.|.|    |.||.  |.:.:...:.||::|..|
Mouse   158 INDNEPKFLDGPYIATVPEMSPVGTSVIQVTATDADDPTYGNSAR--VVYSILQGQPYFSVDSKT 220

  Fly   465 GNI-TALTTFDREERDFYNVKVIASDNSPSSLFDNGEPN--RGHQVFRISIGDKNDHKPHFQQDK 526
            |.| |||...|||.:::|.|.:.|.|.       .|:..  .|.....|::.|.||:.|.|.| |
Mouse   221 GVIRTALMNMDREAKEYYEVIIQAKDM-------GGQLGGLAGTTTVNITLSDVNDNPPRFPQ-K 277

  Fly   527 YLAERLLEDANTNTEVIEVKAEDEDNA--SQILYSIESGNVGDAFKI----GLKTGKITVNQKLD 585
            :....:||.|..::.|..|.|:|.|..  :::.|:|..|:..|||.|    ..:.|.|||.:.|.
Mouse   278 HYQMSVLESAPISSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTDQNFQVGIITVKKPLS 342

  Fly   586 YETITEYELKVRAFD----------GIYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDD 639
            :|:...|.|||...:          |.:.|.|||.|.:||| |.||||:.. |.|.:.|:.|...
Mouse   343 FESKKSYTLKVEGSNPHLEMRFLNLGPFQDTTTVHISVEDV-DEPPVFEPGFYFVEVPEDVTIGT 406

  Fly   640 CILTVEAYDPDIKDRNADQHIVYSIHQ--NDGNRWTID-NSGCLRLVKTLDRDPPNGHKNWQVLI 701
            .|..:.|.|||:.:.:    |.|||.:  :.|..:.:| .:|.|...:.|||:..:.|....:.:
Mouse   407 TIQIISAKDPDVTNNS----IRYSIDRGSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAM 467

  Fly   702 KANDEDGVGTTVSTVKEVTVTLKDINDNAPFLINEMPVYWQ----ENRNPGHVVQ-LQANDYDDT 761
            :.|:...||:..     ||:.:.|:|||||    |.|.:::    ||...|.::| :.|.|.||.
Mouse   468 EMNNPSQVGSVA-----VTIKVLDVNDNAP----EFPRFYEAFICENAKAGQLIQTVSAVDQDDP 523

  Fly   762 PGAGNFTFGIDSEA--TPDIKTKFSMDGD--YLHANVQFDREAQKEYFIPIRISDSGVPRQSAVS 822
            ....:|.:.:..||  .|:...:.:.|..  .|.....|.::.|..:::||.|:|||.|..|   
Mouse   524 HNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRSGFRQQEQSVFYLPILIADSGQPVLS--- 585

  Fly   823 ILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQFRL 887
                                                                             
Mouse   586 ----------------------------------------------------------------- 585

  Fly   888 NPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTK 952
              |||.:|:                                                        
Mouse   586 --STGTLTI-------------------------------------------------------- 592

  Fly   953 EEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSAHGSPYYAPE 1017
                                                                             
Mouse   593 ----------------------------------------------------------------- 592

  Fly  1018 KLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEESCTNELHKSSVPYMIYSNTTSFVGVNA 1082
                                                                             
Mouse   593 ----------------------------------------------------------------- 592

  Fly  1083 FVQAQCVCEAPLMRRCLNGGSPRYGENDVCDCIDGFTGPHCELVSVAFYGSGYAFYEPIAACNNT 1147
                                       .||                              :||  
Mouse   593 ---------------------------QVC------------------------------SCN-- 598

  Fly  1148 KISLEITPQIDQGLIMYLGPLNFNPLLAISDFLALELDNGYPVLTVDYGSGAIRIRHQHIKMVAD 1212
                                                 |:|                  |:...:.
Mouse   599 -------------------------------------DDG------------------HVMSCSP 608

  Fly  1213 RTYQLDIILQRTSIEMTVDNCRLSTCQTLGAPIGPNEFLNVNAPLQLGGTPVDLEQLGRQLNWTH 1277
            ..|.|.:.|.|                  ||                                  
Mouse   609 EAYLLPVSLSR------------------GA---------------------------------- 621

  Fly  1278 VPNQKGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQSVAVAFSFGIDRNFIIAIIVCL-ALLL 1341
                                                                :|||:.|: .||:
Mouse   622 ----------------------------------------------------LIAILACIFVLLV 634

  Fly  1342 IILLAVVVQKKQKNGWHEKDIDDIRETIINYEDEGGGERDTD-YDL----NVLRTQPFYEEKLYK 1401
            ::||.:.:::.:|..:...|.::|.|.|:.|:||||||.||: :|:    |....|.....|..:
Mouse   635 LVLLILSMRRHRKQPYIIDDDENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGAAPKTRQ 699

  Fly  1402 DPHALQGNMRDPNDIPDIADFLGDKKENC-----------------DRDVGATTVDDVRHYAYEG 1449
            |.            :|:|........:.|                 |.|:.|...|.::.|.:||
Mouse   700 DM------------LPEIESLSRYVPQTCAVSSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEG 752

  Fly  1450 DGNSDGSLSSLASCTDDGDLNFDYLSNFGPRFRKLADMYG--EEPS 1493
            ||:..||||||.|.|.|.:.:||:|:::||||||||::||  |.|:
Mouse   753 DGSVAGSLSSLQSATSDSEQSFDFLTDWGPRFRKLAELYGASEGPA 798

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520 28/126 (22%)
Cadherin_repeat 417..518 CDD:206637 36/107 (34%)
Cadherin_repeat 531..619 CDD:206637 34/103 (33%)
Cadherin_repeat 627..729 CDD:206637 28/104 (27%)
Cadherin_repeat 736..834 CDD:206637 26/106 (25%)
LamG 1127..1294 CDD:238058 11/166 (7%)
Cadherin_C 1358..1489 CDD:279398 50/152 (33%)
Cdh20NP_035930.1 CA 85..163 CDD:214520 15/77 (19%)
Cadherin_repeat 169..270 CDD:206637 36/109 (33%)
Cadherin_repeat 278..385 CDD:206637 34/107 (32%)
Cadherin_repeat 394..490 CDD:206637 28/104 (27%)
Cadherin_repeat 498..599 CDD:206637 32/452 (7%)
Cadherin_C 643..794 CDD:366437 53/162 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7605
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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