DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and Cdh6

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:NP_031692.2 Gene:Cdh6 / 12563 MGIID:107435 Length:790 Species:Mus musculus


Alignment Length:1292 Identity:274/1292 - (21%)
Similarity:401/1292 - (31%) Gaps:612/1292 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 PSFVNPIDTPIYLKENLKNFTHPIATLRAVSNMPDKPEVIFELNTGRTEQTNSKNTFVFNQ---- 359
            |:|.||:.                   :..|..|.|.:.:......|.|.:.||.::::||    
Mouse    18 PTFSNPLS-------------------KRTSGFPAKRKALELSANSRNELSRSKRSWMWNQFFLL 63

  Fly   360 --------------------------------------IGNEVT--ISLGKTLDYEAITDYTL-- 382
                                                  |.||.|  |...|.||.|....|.|  
Mouse    64 EEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRA 128

  Fly   383 TMIVRNT-HELGTEHQIKIQVEDVNDNIPYYT-EVKSGTILENEPPGTPVMQVRAFDMD----GT 441
            ..:.|.| ..:..|.:..|::.|:|||.|.:| :|.:.|:.|....||.|:||.|.|.|    |.
Mouse   129 QAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 193

  Fly   442 SANNIVSFELADNREYFTIDPNTGNI-TALTTFDREERDFYNVKVIASDNSPSSLFDNGEPN--R 503
            ||.  |.:.:...:.||:::..||.| |||...|||.|:.|.|.:.|.|.       .|:..  .
Mouse   194 SAK--VVYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDM-------GGQMGGLS 249

  Fly   504 GHQVFRISIGDKNDHKPHFQQDKYLAERLLEDANTNTEVIEVKAEDED---NASQILYSIESGNV 565
            |.....|::.|.||:.|.|.|..| ..:..|.:...|.:..:||.|.|   || :|.|||..|..
Mouse   250 GTTTVNITLTDVNDNPPRFPQSTY-QFKTPESSPPGTPIGRIKASDADVGENA-EIEYSITDGEG 312

  Fly   566 GDAFKI----GLKTGKITVNQKLDYETITEYELKVRA----------FDGIYDDYTTVVIKIEDV 616
            .:.|.:    ..:.|.|||.:.||:|....|.|||.|          :.|.:.|..||.|.::||
Mouse   313 HEMFDVITDQETQEGIITVKKLLDFEKKKVYTLKVEASNPHVEPRFLYLGPFKDSATVRIVVDDV 377

  Fly   617 NDNPPVF-KQDYSVTILEETTYDDCILTVEAYDPD-----IK---DRNADQHIVYSIHQNDGNRW 672
             |.|||| |..|.:.|.|:...:..|.:|.|.|||     :|   ||:.|...:::|...:|:.:
Mouse   378 -DEPPVFSKLAYILQIREDARINTTIGSVAAQDPDAARNPVKYSVDRHTDMDRIFNIDSGNGSIF 441

  Fly   673 TIDNSGCLRLVKTLDRDPPNGHKNWQVLIKANDEDGVGTTVSTVKEVTVTLKDINDNAPFLINEM 737
            |         .|.|||:....|                       .:||...:||:         
Mouse   442 T---------SKLLDRETLLWH-----------------------NITVIATEINN--------- 465

  Fly   738 PVYWQENRNPGHVVQLQANDYDDTPGAGNFTFGIDSEATPDIKTKFSMDGDYLHANVQFDREAQK 802
                                                                             
Mouse   466 ----------------------------------------------------------------- 465

  Fly   803 EYFIPIRISDSGVPRQSAVSILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDD 867
                         |:||:...|::.:.|||||                 |||      |.:    
Mouse   466 -------------PKQSSRVPLYIKVLDVNDN-----------------APE------FAE---- 490

  Fly   868 WDLEDKYFEWKDLPHDQFRLNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVR 932
                  ::|                  |.:...|:.:.                        :::
Mouse   491 ------FYE------------------TFVCEKAKADQ------------------------LIQ 507

  Fly   933 ELPEEAVDKSGSIRFINVTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQN 997
            .|  .||||                                                        
Mouse   508 TL--RAVDK-------------------------------------------------------- 514

  Fly   998 ENHTLDVRFSAHGSPY-YAPEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEESCTNEL 1061
                 |..:|.|...: .|||.                                           
Mouse   515 -----DDPYSGHQFSFSLAPEA------------------------------------------- 531

  Fly  1062 HKSSVPYMIYSNTTSFVGVNAFVQAQCVCEAPLMRRCLNGGSPRYGENDVCDCIDGFTGPHCELV 1126
             .||..:.|..|..:..|:             |.|:                             
Mouse   532 -ASSSNFTIQDNKDNTAGI-------------LTRK----------------------------- 553

  Fly  1127 SVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNFNPLLAISDFLALELDNGYPVL 1191
                  :||..:|                     :..||.|      :.||       ||.||| 
Mouse   554 ------NGYNRHE---------------------MSTYLLP------VVIS-------DNDYPV- 577

  Fly  1192 TVDYGSGAIRIRHQHIKMVADRTYQLDIILQRTSIEMTVDNCRLSTCQTLGAPIGPNEFLNVNAP 1256
                                          |.::..:||   |:..|...|              
Mouse   578 ------------------------------QSSTGTVTV---RVCACDHHG-------------- 595

  Fly  1257 LQLGGTPVDLEQLGRQLNWTHVPNQKGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQSVAVAF 1321
                                                               |:.| | .:.|:..
Mouse   596 ---------------------------------------------------NMQS-C-HAEALIH 607

  Fly  1322 SFGIDRNFIIAIIVCLALLL--IILLAVVVQKKQKNGWHEKDI---DDIRETIINYEDEGGGERD 1381
            ..|:....::||::|:.:||  ::|.|.:.::::|    |..|   :|||:.|::|.||||||.|
Mouse   608 PTGLSTGALVAILLCIVILLVTVVLFAALRRQRKK----EPLIISKEDIRDNIVSYNDEGGGEED 668

  Fly  1382 TD-YDLNVLRTQPFYEE-KLYKD--PHALQGNMRDP--NDIPDIADFLGDKKENCDRDVGATTVD 1440
            |. :|:..||.....|: |..:|  |.||....|.|  .|..|:.||:..:.:..|.|..|...|
Mouse   669 TQAFDIGTLRNPEAMEDSKSRRDIVPEALFLPRRTPTARDNTDVRDFINQRLKENDTDPTAPPYD 733

  Fly  1441 DVRHYAYEGDGNSDGSLSSLASCTDDGDLNFDYLSNFGPRFRKLADMYGEEPSDTDS 1497
            .:..|||||.|:...|||||.|.|.|||.::||||::||||:|||||||...||.||
Mouse   734 SLATYAYEGTGSVADSLSSLESVTTDGDQDYDYLSDWGPRFKKLADMYGGMDSDKDS 790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520 27/124 (22%)
Cadherin_repeat 417..518 CDD:206637 35/107 (33%)
Cadherin_repeat 531..619 CDD:206637 33/104 (32%)
Cadherin_repeat 627..729 CDD:206637 25/109 (23%)
Cadherin_repeat 736..834 CDD:206637 7/97 (7%)
LamG 1127..1294 CDD:238058 19/166 (11%)
Cadherin_C 1358..1489 CDD:279398 63/139 (45%)
Cdh6NP_031692.2 CA 79..157 CDD:214520 19/77 (25%)
Cadherin_repeat 163..264 CDD:206637 36/109 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 260..291 9/31 (29%)
Cadherin_repeat 272..379 CDD:206637 34/109 (31%)
Cadherin_repeat 388..484 CDD:206637 32/214 (15%)
Cadherin_repeat 492..589 CDD:206637 38/361 (11%)
Cadherin_C 637..783 CDD:395833 65/149 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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