DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and LOC100493382

DIOPT Version :9

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:XP_002934429.3 Gene:LOC100493382 / 100493382 -ID:- Length:2539 Species:Xenopus tropicalis


Alignment Length:2155 Identity:474/2155 - (21%)
Similarity:752/2155 - (34%) Gaps:775/2155 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 SLLSPALALHSPPDKNFSGDNRKPAFKNCAGYA--PKVKEEQPENTYVLTVEAVDPD--PDQVIR 122
            ||.|.|..:.|..|.|    |.||.|..||.|.  ..|.|.||..|:||.|||.|.|  .:..::
 Frog   435 SLTSTATVIVSVDDIN----NNKPVFHKCASYRDHAAVLENQPPGTFVLQVEAKDADYGVNGQVK 495

  Fly   123 YSIVQSPFERPKFFINPSTGVIFTTHTFDRDEPIHEKFVFVTVQATDNGLPPLDDVCTFNVTIED 187
            |.:|......|.|.|:|.||:|.|..:|||::   :|...:|::|||....||..:|..|:.|.|
 Frog   496 YGMVHKEGTLPAFSIHPDTGIITTVQSFDREK---QKEYPITIKATDQAAEPLIGLCQINILILD 557

  Fly   188 INDNAPAFNKARYDESMSENAQPDAVVMTISASDFDDGNNSLVEYEILRERDFQYFKIDKESGII 252
            .|||.|:|...||:..:.|:.......:.::|.|.|.|:|:.:.|....|.. ..||::..:|.:
 Frog   558 ENDNDPSFENNRYEYFLREDTSVGTSFLQVAAHDADYGSNASITYATSGEEP-MIFKVNSSTGWL 621

  Fly   253 YLKRPIDKRPGQSYAIIVRAYNVVPDPPQDAQIEVRIRVVESSIKPPSFVNPIDTPIYLKENLKN 317
            |:...|.:||     :|.:.........:..::||.:||.::..:||.:... ...|.:.||...
 Frog   622 YVNHSISRRP-----LITQEVIATDGGNRSTKVEVAVRVTDAQNQPPVWEKG-RYEIVVPENTVR 680

  Fly   318 FTHPIATLRAVSNMPDKPEVIFELNTGRTEQTNSKNTF--VFNQIGNEVTISLGKTLDYEAITDY 380
            .| .:.|::|.|.:.| |.|.:.|..|...::|....|  ..|:.....::.:.:.||||...::
 Frog   681 DT-AVVTVKATSLLGD-PRVTYNLEEGLVPESNMPVRFYLTVNREEGSASVLIAEPLDYETTKNF 743

  Fly   381 TLTMIVRNTH--ELGTEHQIKIQVEDVNDNIPYYT-EVKSGTILENEPPGTPVMQVRAFDMDGTS 442
            .||:..:|..  .|.....:.|.|.|||||:|::| .:...::.|....||.|:||.|.|.| ..
 Frog   744 ILTIRAQNVAPVPLAAFTTVYINVTDVNDNVPFFTSSIYEASVTEGLGLGTFVLQVSATDQD-LG 807

  Fly   443 ANNIVSFELADNRE----YFTIDPNTGNITALTTFDREERDFYNVKVIASDNSPSSL-FDNGEPN 502
            .|..:::.:.::|.    .|.|||.||:|...:.||||.|..|.:::.:||.|.|:. ..:|:||
 Frog   808 LNGEITYSILEDRNGDHVLFHIDPQTGSIFTASVFDRETRSSYLLEIKSSDGSESARPGKHGQPN 872

  Fly   503 RGHQVFRISIGDKNDHKPHFQQDKYLAERLLEDANTNTEVIEVKAEDEDNA--SQILYSIESGNV 565
            ......||.|.|.||:||.|.|..|.. .:.||.:....||.|.|.|.|..  ::|.|.|.:||:
 Frog   873 SDTAYVRIFISDVNDNKPSFTQSAYYV-NVDEDQDVGYIVITVTAHDPDEGVNAKIRYQITAGNI 936

  Fly   566 GDAFKIGLKTGKITVNQKLDYETITEYELKVRAFDGIYDDYTTVVIKIEDVNDNPPVFK-QDYSV 629
            |....:...||.|.:.|.||||.:..|||.:.|.||.::|:.||.|.:.:.||..|||. .:|..
 Frog   937 GGVLDMDPDTGSIFIFQPLDYEEVQIYELTLLASDGKWEDFATVTINVINKNDEAPVFSHNEYHG 1001

  Fly   630 TILEE-TTYDDCILTVEAYDPDIKDRNADQHIVYSIHQNDGNR-WTIDNS-GCLRLVKTLDRDPP 691
            .:.|| :.....::.|.|.||   |..|...:.||:|....|. :|||.. |.:.:.|.|||:. 
 Frog  1002 HVTEEQSKLPVLVMQVSASDP---DNGAHGSLKYSLHGKGANNIFTIDEERGNVFVQKALDREE- 1062

  Fly   692 NGHKNWQVLIKANDEDGVGTT------------------------------------VSTVKEVT 720
              |..|:.::.|.||:|.|.|                                    .:||.|:|
 Frog  1063 --HGLWRFVVLATDEEGEGLTGFADVIIYVVDINDNAPQFTCALSSCNANVYENAPPNTTVLEMT 1125

  Fly   721 ----------------------------------------------------------------- 720
                                                                             
 Frog  1126 AVDADDKNEEINAILTYSMLNNTMNLFSINANTGTIYTLGNLDREKNDKYVLLVKVIDGGGLATT 1190

  Fly   721 ----------------------------------------------------------------- 720
                                                                             
 Frog  1191 GTATISVLDINDHVPRFTQDSWNSVILETNDINTKVLEVSASDEDIGENALLTFSIIDGDPDQKF 1255

  Fly   721 -----------------------------------------------VTLKDINDNAP-FL---- 733
                                                           :.|:|.||||| ||    
 Frog  1256 TIESDRMTNQAEIKLKKKLDYENPQERWFNLTIKVEDPDFSSLSFCFIELQDCNDNAPVFLAPFV 1320

  Fly   734 ----------------------------------------------------------------- 733
                                                                             
 Frog  1321 QLSPVLENVTIGTVLTQVIASDADSGINGQIRYSIWPSSDVLGEFFVDPAGFVKVKKALDREVDS 1385

  Fly   734 ----------------------------INE---------MPVYWQENRNPG--HVVQ----LQA 755
                                        :|:         .||.|:....|.  |:.:    |.|
 Frog  1386 QYHLVILASDEGFPSQTGSATVSFSLLDVNDNGPVFDGLYTPVIWENTAWPQIVHMNESSDLLYA 1450

  Fly   756 NDYDDTPGAGNFTFGIDSEATPDIKTKFSMDGD---YLHANVQFDREAQKEYFIPIRISDSGVPR 817
            :|||.......|.|.:.||.|.......:.:|:   .:||...||||..||:::||.|:|||.|.
 Frog  1451 SDYDTLENGPPFRFSLPSEYTNSTDFLLNDNGNNTATVHALRAFDREKDKEFYLPIIITDSGNPP 1515

  Fly   818 QSAVSILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPH 882
            .||.::|.:.|||.|||....|...::|.:|.|.: ..::|:||..|.|||| ...|.....:| 
 Frog  1516 MSATNMLLITIGDENDNPHRGGHKDVYINSYGGWS-AVELGKVFAPDEDDWD-NKTYTSVSKMP- 1577

  Fly   883 DQFRLNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRF 947
            .|||||.:.|.:.||....:|.||:...|: |.::   ..|.:.|.:.|:::.:||:..|.|:|.
 Frog  1578 VQFRLNQNNGSLVMLEKAHQGTYDIKIKVS-DGVW---PEVMSTVRIHVKDITKEAILNSVSLRL 1638

  Fly   948 INVTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTLDVRFSA-HGS 1011
            .|:|.:|.:     .:.....|..::||:::|.:.....|||.:|::...|.|..|:||:. ..|
 Frog  1639 TNITAQEIL-----HKDEYGFSTYEQLQMAIAAVVPAHPSNVQIFSLENTEGHQTDMRFAVRESS 1698

  Fly  1012 PYYAPEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEESCTNELHKSSVPYMIYSNTTS 1076
            .:|.|:.|..:::.::.::::.|......|.:|.||.:.....:.||:....:..|.::.:...|
 Frog  1699 TFYKPDVLQSVLSAHRGKIQSILKSNASYVEVDFCLPQDCGNAQECTSYSAFTENPSLVDTGRIS 1763

  Fly  1077 FVGV--NAFVQAQC--------VCEAPLMRRCLNGGSPRYGENDV-CDCIDGFTGPHCELVSVAF 1130
            ||.|  ||....:|        .|.:.|...|||||:.|...|.. |.|:..|.||.|:.....|
 Frog  1764 FVSVAHNANTICRCSLRDRVHQSCSSMLQNPCLNGGTCRDTNNGYRCHCLPQFHGPLCQQTQRTF 1828

  Fly  1131 YGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNFNPLLAISDFLALELDNGYPVLTVDY 1195
            .|:|||::.||..|.::.:|||.......||::|.||:...|.....:|.|:.:....|.:|:..
 Frog  1829 NGNGYAWFPPIRHCTDSHLSLEFISDKHDGLLLYSGPIFNQPSGNDHNFFAIGILRSVPTVTIRE 1893

  Fly  1196 GSGAIRIRHQHIKMVADRT-YQLDIILQRTSIEMTVDNCRLS------------------TCQTL 1241
            |:..:.::......|.|.| :::|:.:::..:.:.:|.|..|                  .|:..
 Frog  1894 GTSTLHLQFPASVNVTDGTWHRIDMRIKKKIVSVILDRCSSSVINEKEGVGKEFLIEDRTNCEVS 1958

  Fly  1242 GAPIGPNEFLNVNAPLQLGGTPVDLEQLGRQLNWTHVPNQKGFFGCIRNLTINEQTYNLG----- 1301
            |.......|.|.::.|||||.........|||.:.|      |.||:||:.:|:|.|:||     
 Frog  1959 GLIRQEMRFWNPHSVLQLGGVKESTPPSYRQLPYQH------FKGCLRNVILNKQMYDLGVSLES 2017

  Fly  1302 ----------------------------------------------------------------M 1302
                                                                            :
 Frog  2018 INSFPGCSVKDPACSLASPCEVPPRCTKESGLTSCDCLPNGSGYDCEKDVNEYYFQLGSSVHYQL 2082

  Fly  1303 PSVF----------------------------------------------------------RNI 1309
            |.|.                                                          ..|
 Frog  2083 PHVLPTQRTYFNAMVRTRHANSIILSLTSRDRTEYIQLQMMAGLLTVSYNIGDGDLMVQLPDHKI 2147

  Fly  1310 DSG-------------------------------------------------------------- 1312
            |:|                                                              
 Frog  2148 DTGEWNEVTMERIQNEFTLRVNQGNRQREITDAPGTYKEIKVDPNSIILGTDSSHLLSFQGCMKD 2212

  Fly  1313 ----------------------------------------------------------------- 1312
                                                                             
 Frog  2213 ARLNNYRLPMENHTISAVSIINIHGVREGCLSKACKENPCSKDFICIDLWMMHKCSCPSGYLHIE 2277

  Fly  1313 ----------------CQQSVAVAFS---------------------------FGIDRNFIIAII 1334
                            |:....||.|                           ||.  :..:.|.
 Frog  2278 NETKQGCIYTECASTPCKHGTCVAQSPTDYVCHCSNGYAGSKCDVLLQISDPGFGF--SIFLTIG 2340

  Fly  1335 VCLALLLIILLAVVV----QKKQKN------GWHEKDIDDIRETIINYEDEGGGERD------TD 1383
            ||:..|:::::.|.:    ..|:||      ..:.::::|.|:.|..|.:|||||.|      |:
 Frog  2341 VCVLCLIVVIVGVFMWSHCNNKRKNQGVYHVSAYNEELEDTRQNIFQYNEEGGGEEDQDAFNMTE 2405

  Fly  1384 YDLNV-----------LRTQPFYEEKLYKDPHALQGNMRDPNDIPDIADFLGDKKENCDRDVG-- 1435
            ..|::           :||: .....|..|.|. ..:..:|:.:|       ..|.:|....|  
 Frog  2406 LQLSLQSSPVNTLCRTMRTR-HLNSPLSCDYHT-SISQEEPSQLP-------PSKPSCSFTSGDF 2461

  Fly  1436 ----------------ATTVDDVRHYAYEGDGNSDGSLSSLASCTDDGDLNFDYLSNFGPRFRKL 1484
                            |.:.|.::.|..||||:...|||:|||...:.||.|:.:.::||:|.||
 Frog  2462 GQYFYDIFKDTTYLQQALSCDSLKIYDMEGDGSIASSLSTLASSGVEEDLVFEEIHDWGPKFGKL 2526

  Fly  1485 ADMYGEEPSD 1494
            :.:|.....|
 Frog  2527 SKLYSYTEED 2536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 38/101 (38%)
Cadherin_repeat 200..292 CDD:206637 20/91 (22%)
CA 332..410 CDD:214520 23/81 (28%)
Cadherin_repeat 417..518 CDD:206637 36/105 (34%)
Cadherin_repeat 531..619 CDD:206637 33/89 (37%)
Cadherin_repeat 627..729 CDD:206637 36/317 (11%)
Cadherin_repeat 736..834 CDD:206637 38/115 (33%)
LamG 1127..1294 CDD:238058 47/185 (25%)
Cadherin_C 1358..1489 CDD:279398 43/165 (26%)
LOC100493382XP_002934429.3 Cadherin_repeat 56..138 CDD:206637
Cadherin_repeat 150..242 CDD:206637
Cadherin_repeat 256..344 CDD:206637
Cadherin_repeat 353..452 CDD:206637 7/20 (35%)
Cadherin_repeat 465..561 CDD:206637 37/98 (38%)
Cadherin_repeat 570..658 CDD:206637 21/93 (23%)
Cadherin_repeat 670..773 CDD:206637 28/104 (27%)
Cadherin_repeat 781..888 CDD:206637 36/107 (34%)
Cadherin_repeat 897..989 CDD:206637 33/92 (36%)
Cadherin_repeat 998..1096 CDD:206637 29/103 (28%)
Cadherin_repeat 1108..1203 CDD:206637 4/94 (4%)
Cadherin_repeat 1216..1311 CDD:206637 3/94 (3%)
Cadherin_repeat 1325..1417 CDD:206637 1/91 (1%)
Cadherin_repeat 1425..1532 CDD:206637 38/106 (36%)
Cadherin_repeat 1553..1625 CDD:206637 26/77 (34%)
EGF_CA 1787..1822 CDD:238011 14/34 (41%)
LamG 1826..2005 CDD:238058 47/184 (26%)
LamG 2096..2217 CDD:214598 3/120 (3%)
EGF 2247..2273 CDD:394967 0/25 (0%)
EGF 2288..2319 CDD:214544 4/30 (13%)
Cadherin_C 2379..2530 CDD:395833 43/159 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 167 1.000 Domainoid score I3800
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4879at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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