DRSC/TRiP Functional Genomics Resources

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Protein Alignment shg and cdh8

DIOPT Version :10

Sequence 1:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster
Sequence 2:XP_002935098.2 Gene:cdh8 / 100486228 XenbaseID:XB-GENE-1002704 Length:810 Species:Xenopus tropicalis


Alignment Length:67 Identity:16/67 - (23%)
Similarity:26/67 - (38%) Gaps:24/67 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 VGDIAHGFLYEQGGAAQIAGVLLNTIKN---------NPDGTFCLNELVRKFRGFDVHEPNTVLV 152
            ||..::.|:.:..|.     :||.::||         :..|..||          |:|..:..||
 Frog   350 VGYGSYDFMKQSRGM-----LLLYSLKNPSFPEYMFSSNSGVMCL----------DIHVDHPYLV 399

  Fly   153 MV 154
            .|
 Frog   400 AV 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 16/67 (24%)
Cadherin_repeat 200..292 CDD:206637
CA 332..410 CDD:214520
Cadherin_repeat 417..518 CDD:206637
Cadherin_repeat 531..619 CDD:206637
Cadherin_repeat 627..729 CDD:206637
Cadherin_repeat 736..834 CDD:206637
LamG 1127..1294 CDD:238058
CADH_Y-type_LIR 1430..1489 CDD:460041
cdh8XP_002935098.2 CA 98..176 CDD:214520
Cadherin_repeat 182..>262 CDD:206637
Cadherin_repeat 291..398 CDD:206637 13/62 (21%)
Cadherin_repeat 406..503 CDD:206637
Cadherin_repeat 511..613 CDD:206637
CADH_Y-type_LIR 743..801 CDD:460041
Blue background indicates that the domain is not in the aligned region.

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