DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3295 and Rmnd5b

DIOPT Version :9

Sequence 1:NP_611536.1 Gene:CG3295 / 37382 FlyBaseID:FBgn0034573 Length:432 Species:Drosophila melanogaster
Sequence 2:NP_001017473.1 Gene:Rmnd5b / 497900 RGDID:1559511 Length:393 Species:Rattus norvegicus


Alignment Length:431 Identity:170/431 - (39%)
Similarity:253/431 - (58%) Gaps:47/431 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CSSVEKDLTRVVSKLEQLHENAEADIGDIATQMSELVEVLSRAEQLVTTLNSSTQVSQDDPMGDA 72
            |:.||::|.:|:.|.....::.|..:.::...:.:|     |||.....|       |..|:...
  Rat     4 CACVERELDKVLHKFLTYGQHCEQSLEELLHYVGQL-----RAELASAAL-------QGTPLSAT 56

  Fly    73 VSMQVETEPTAPQRLTERQVESVRNALARC----HERVQKLSTEHRDLHGSISKIGKAIDRNFSA 133
            :|:                      .:::|    .:.||||:::|:|:|.|:|::||||||||.:
  Rat    57 LSL----------------------VMSQCCRKIKDTVQKLASDHKDIHSSVSRVGKAIDRNFDS 99

  Fly   134 DFSSTMRVDVLQD--EENLMLLNKAIAKHYCRQGMDDVARTLIRECKMSPEHAQDVFDSEREFAD 196
            :....:. |.:.|  |:...:|..||.:|..:|||..||..|.:|..::.:     .|.::.|.:
  Rat   100 EICGVVS-DAVWDSREKQQQILQMAIVEHLYQQGMLSVAEELCQESTLNVD-----LDFKQPFLE 158

  Fly   197 IYGIWVKIQKRDLTDALKWAKMYSQQLSDRHSLIEFRLHRMRFMQLVSYGLDSQREAISYARLNF 261
            :..|...:.::||..||:||..:.|:|.:.:|.:||:|||:.|::|::.|.:.|.||:|||| :|
  Rat   159 LNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAGGPEKQLEALSYAR-HF 222

  Fly   262 KKFAVRYEHEIANLMASFIYLPSGLENSPYKHFLGQEKWTELSFIFLKDACQLLGISKNSALSVV 326
            :.||..::.||..:|.|.:||..|||.|||.|.|....|.|:...|.:|||.|||:|..|.|||.
  Rat   223 QPFARLHQREIQVMMGSLVYLRLGLEKSPYCHLLDNSHWAEICETFTRDACSLLGLSVESPLSVS 287

  Fly   327 VNAGCTALPALLNIKQVMQSRQVLGMWNGCDELPIEIDLQPEFRFHSIFACPILRQQTSEDNPPK 391
            ..:||.|||.|:|||.|::.||..|:|:..|||||||:|..:..:||:|||||||||||:.|||.
  Rat   288 FASGCVALPVLMNIKAVIEQRQCTGVWSHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNPPI 352

  Fly   392 KLTCGHVISNDALHKLSVGHILKCPYCPVEQNAEEAVRIYF 432
            ||.||||||.|||:||..|..|||||||:|||..:..||.|
  Rat   353 KLICGHVISRDALNKLINGGKLKCPYCPMEQNPADGKRIIF 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3295NP_611536.1 COG5109 88..432 CDD:227440 154/349 (44%)
LisH 152..181 CDD:128913 11/28 (39%)
CTLH 193..250 CDD:128914 19/56 (34%)
CRA 252..343 CDD:214806 46/90 (51%)
zf-RING_UBOX 377..416 CDD:290181 28/38 (74%)
Rmnd5bNP_001017473.1 COG5109 60..393 CDD:227440 154/339 (45%)
CLTH 155..299 CDD:402305 62/144 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341836
Domainoid 1 1.000 125 1.000 Domainoid score I5350
eggNOG 1 0.900 - - E1_COG5109
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 313 1.000 Inparanoid score I2499
OMA 1 1.010 - - QHG55101
OrthoDB 1 1.010 - - D576638at33208
OrthoFinder 1 1.000 - - FOG0002102
OrthoInspector 1 1.000 - - otm45806
orthoMCL 1 0.900 - - OOG6_102297
Panther 1 1.100 - - LDO PTHR12170
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1554
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.810

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