DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3295 and rmnd5b

DIOPT Version :9

Sequence 1:NP_611536.1 Gene:CG3295 / 37382 FlyBaseID:FBgn0034573 Length:432 Species:Drosophila melanogaster
Sequence 2:NP_957068.1 Gene:rmnd5b / 393747 ZFINID:ZDB-GENE-040426-1744 Length:391 Species:Danio rerio


Alignment Length:431 Identity:175/431 - (40%)
Similarity:254/431 - (58%) Gaps:49/431 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CSSVEKDLTRVVSKLEQLHENAEADIGDIATQMSELVEVLSRAEQLVTTLNSSTQVSQDDPMGDA 72
            |:.||::|.:|:.:.......:|..:.::...:.||     |:..|                  |
Zfish     4 CACVERELEKVLHRFVTYGHQSEERLDELLNNVCEL-----RSRLL------------------A 45

  Fly    73 VSMQVETEPTAPQRLTERQVESVRNALARC----HERVQKLSTEHRDLHGSISKIGKAIDRNFSA 133
            ..:|            :..:..:...:|:|    .|.||.|::.|:|:|||:||:||||||||.|
Zfish    46 YGVQ------------DADLSVLHQTMAQCCKEIKETVQMLASRHKDIHGSVSKVGKAIDRNFDA 98

  Fly   134 DFSSTMRVDVLQDEENLMLLNKAIAKHYCRQGMDDVARTLIRECKMSPEHAQDVFD--SEREFAD 196
            :.|:.:..:|....|....|::.|.:|..||||..||..|.:|..:       |.|  .::.|.:
Zfish    99 EVSAVVAENVWDSPERQKYLSETIVEHLYRQGMLSVAEDLCQESGV-------VIDMSMKQPFLE 156

  Fly   197 IYGIWVKIQKRDLTDALKWAKMYSQQLSDRHSLIEFRLHRMRFMQLVSYGLDSQREAISYARLNF 261
            :..|...::.:||..||:||....|:|.|.:|.:||:|||:.|:.|::.|:..|:||:.||| :|
Zfish   157 LNRILEALRTQDLRPALEWAVTNRQRLLDLNSTLEFKLHRLYFISLLNGGIGKQQEALQYAR-HF 220

  Fly   262 KKFAVRYEHEIANLMASFIYLPSGLENSPYKHFLGQEKWTELSFIFLKDACQLLGISKNSALSVV 326
            :.||.:::.:|..||.|.:||..|:|||||:..|..::|.|:..||.:|||.|||:|..|.|||.
Zfish   221 QPFASQHQRDIQILMGSLVYLRHGIENSPYRSLLETDQWAEICNIFTRDACALLGLSVESPLSVS 285

  Fly   327 VNAGCTALPALLNIKQVMQSRQVLGMWNGCDELPIEIDLQPEFRFHSIFACPILRQQTSEDNPPK 391
            ..:||.|||.|:|||||::.||..|:|...|||||||||..:..:||:||||||||||||.|||.
Zfish   286 FASGCMALPVLMNIKQVIEQRQCSGVWTHKDELPIEIDLGKKCWYHSVFACPILRQQTSESNPPM 350

  Fly   392 KLTCGHVISNDALHKLSVGHILKCPYCPVEQNAEEAVRIYF 432
            ||.||||||.|||:||:....|||||||:|||..:|.:|||
Zfish   351 KLICGHVISRDALNKLTNAGKLKCPYCPMEQNPSDAKQIYF 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3295NP_611536.1 COG5109 88..432 CDD:227440 161/349 (46%)
LisH 152..181 CDD:128913 11/28 (39%)
CTLH 193..250 CDD:128914 20/56 (36%)
CRA 252..343 CDD:214806 45/90 (50%)
zf-RING_UBOX 377..416 CDD:290181 28/38 (74%)
rmnd5bNP_957068.1 CLTH 153..297 CDD:287564 62/144 (43%)
CTLH 154..206 CDD:128914 19/51 (37%)
CRA 208..302 CDD:214806 46/94 (49%)
zf-RING_UBOX 336..375 CDD:290181 28/38 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581864
Domainoid 1 1.000 123 1.000 Domainoid score I5556
eggNOG 1 0.900 - - E1_COG5109
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 311 1.000 Inparanoid score I2583
OMA 1 1.010 - - QHG55101
OrthoDB 1 1.010 - - D576638at33208
OrthoFinder 1 1.000 - - FOG0002102
OrthoInspector 1 1.000 - - oto40538
orthoMCL 1 0.900 - - OOG6_102297
Panther 1 1.100 - - LDO PTHR12170
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1719
SonicParanoid 1 1.000 - - X1554
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1514.840

Return to query results.
Submit another query.