DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10543 and scrt-1

DIOPT Version :10

Sequence 1:NP_001369100.1 Gene:CG10543 / 37379 FlyBaseID:FBgn0034570 Length:1666 Species:Drosophila melanogaster
Sequence 2:NP_491001.2 Gene:scrt-1 / 183848 WormBaseID:WBGene00016948 Length:178 Species:Caenorhabditis elegans


Alignment Length:88 Identity:36/88 - (40%)
Similarity:48/88 - (54%) Gaps:10/88 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   839 CEVCGEEFQSKNALYQHIIRVHKRDNFFECHICHNRFTLKANLERHVQLHTEIKRPYVCDLCGSS 903
            |:|||:.| |:..|.|..:|.|..:..|:|.||..||..|:||..|:|.|:..| |:.|..||.|
 Worm    96 CKVCGKRF-SRQWLLQGHLRTHTGEKPFQCEICSKRFADKSNLRAHIQTHSGTK-PHKCPRCGKS 158

  Fly   904 YFTYPALKEHYSNAHVDVSECKC 926
            :    |||. |.:.|   .|.||
 Worm   159 F----ALKS-YLSKH
---EESKC 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10543NP_001369100.1 C2H2 Zn finger 727..747 CDD:275368
C2H2 Zn finger 751..773 CDD:275368
C2H2 Zn finger 781..801 CDD:275368
PHA00733 <804..860 CDD:177301 9/20 (45%)
C2H2 Zn finger 811..827 CDD:275368
C2H2 Zn finger 839..860 CDD:275368 9/20 (45%)
C2H2 Zn finger 868..888 CDD:275368 10/19 (53%)
C2H2 Zn finger 897..913 CDD:275368 7/15 (47%)
C2H2 Zn finger 926..946 CDD:275368 1/1 (100%)
KREPA <944..>1009 CDD:483960
C2H2 Zn finger 954..975 CDD:275368
scrt-1NP_491001.2 zf-C2H2 94..116 CDD:395048 9/20 (45%)
C2H2 Zn finger 96..116 CDD:275368 9/20 (45%)
zf-H2C2_2 109..132 CDD:463886 8/22 (36%)
C2H2 Zn finger 124..144 CDD:275368 10/19 (53%)
zf-H2C2_2 136..160 CDD:463886 11/28 (39%)
C2H2 Zn finger 152..168 CDD:275368 8/20 (40%)
Blue background indicates that the domain is not in the aligned region.

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