DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosalpha3 and psmb10

DIOPT Version :9

Sequence 1:NP_476691.1 Gene:Prosalpha3 / 37378 FlyBaseID:FBgn0261394 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001002543.2 Gene:psmb10 / 436816 ZFINID:ZDB-GENE-040718-278 Length:276 Species:Danio rerio


Alignment Length:212 Identity:55/212 - (25%)
Similarity:97/212 - (45%) Gaps:21/212 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 EGRLYQVEYAMEAISHAGTCL-GILAEDGILLAAECRSTNKLLDSAIPSEKIYRLNDNMVCSVAG 78
            |..|.:..|:.......||.: |::.:||::|.|:.|:|:.::.:.....||:.:..|:.|..||
Zfish    25 EANLSEKGYSAPNARKTGTTIAGLVFKDGVILGADTRATDDMVVADKNCMKIHYIAPNIYCCGAG 89

  Fly    79 ITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDNKY 143
            :.:||.|.|..:....:.:..|.|.. |...:|:.  .:||...:|.|.  .|.||:..|.|.. 
Zfish    90 VAADAEVTTQMMSSNVELHSLSTGRP-PLVAMVTR--QLKQMLFRYQGH--IGSSLIVGGVDVN- 148

  Fly   144 GYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVLS------- 201
            |.|||...|.|:|.......:|:...:|||:.:    |:....:.|.:||.|....::       
Zfish   149 GAQLYSVYPHGSYDKLPFLTMGSGAASAISVFE----DRYKPNMELEEAKQLVRDAITAGIFCDL 209

  Fly   202 ---MTLDTTKLTPEKVE 215
               ..:|...:|.:||:
Zfish   210 GSGSNVDLCVITDKKVD 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha3NP_476691.1 PTZ00246 1..245 CDD:173491 55/212 (26%)
proteasome_alpha_type_4 3..219 CDD:239721 55/212 (26%)
psmb10NP_001002543.2 PRE1 40..224 CDD:223711 50/193 (26%)
proteasome_beta_type_7 43..231 CDD:239732 51/194 (26%)
Pr_beta_C 237..270 CDD:289249
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.