DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha3 and Psmb1

DIOPT Version :9

Sequence 1:NP_476691.1 Gene:Prosalpha3 / 37378 FlyBaseID:FBgn0261394 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_035315.1 Gene:Psmb1 / 19170 MGIID:104884 Length:240 Species:Mus musculus


Alignment Length:230 Identity:55/230 - (23%)
Similarity:89/230 - (38%) Gaps:37/230 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 FSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAIPSEKIYRLNDNMVCSV 76
            |||        ||.    :.||.|.|..||..::|::.|.:.........|.|.|:|.|..|...
Mouse    29 FSP--------YAF----NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGC 81

  Fly    77 AGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDN 141
            :|...|...||..:....:.|:.|..:.:....:.:.|..|..:...:    |:.|..:..|.|.
Mouse    82 SGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF----PYYVYNIIGGLDE 142

  Fly   142 KYGYQLYQSDPSGNY--GGWKATCIGNNFGAAISMLKQELADK----------ENVKLTLADAKD 194
            :....:|..||.|:|  ..:||       |.:.|.:.|.|.|.          |:|.|||..|..
Mouse   143 EGKGAVYSFDPVGSYQRDSFKA-------GGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMR 200

  Fly   195 LAIKVLSMTLDTTKLTPE--KVEMATLQRVDNKTV 227
            |...|.....:....|.:  ::.:.|.:.:..:||
Mouse   201 LVKDVFISAAERDVYTGDALRICIVTKEGIREETV 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha3NP_476691.1 PTZ00246 1..245 CDD:173491 55/230 (24%)
proteasome_alpha_type_4 3..219 CDD:239721 52/220 (24%)
Psmb1NP_035315.1 PRE1 18..240 CDD:223711 55/230 (24%)
proteasome_beta_type_1 29..240 CDD:239726 55/230 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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