DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9313 and SdicC

DIOPT Version :9

Sequence 1:NP_001286657.1 Gene:CG9313 / 37374 FlyBaseID:FBgn0034566 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001303578.1 Gene:SdicC / 26067076 FlyBaseID:FBgn0283434 Length:544 Species:Drosophila melanogaster


Alignment Length:565 Identity:114/565 - (20%)
Similarity:214/565 - (37%) Gaps:122/565 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 GEGEGEGEGAAARQEDDEPAHQAAAVSSKKRKLINQFNYCERGALTYTNPKRNVDTQTIPPPRSQ 252
            |.|.|:.....|:.:|:|         |..:.|.|.|                  |..:||    
  Fly    54 GGGNGDVLAFDAQGDDEE---------SSLQNLGNGF------------------TSKLPP---- 87

  Fly   253 FGANVLQWVIYDSYMENFAESQKD--------GTKKE-ERKRGKREKKFRDKSAI--AEQLNKKY 306
                        .|:.:...:.||        ..||| |.|:...|.....|..|  :|...:..
  Fly    88 ------------GYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFV 140

  Fly   307 LKCWQILERMINQNIYDDIAHDYRYWEDPADEFREGEGNLLPLWKFQYDK--TKKMNVTDILFNP 369
            ::..:::||.:::|:  ||..||....|..:...|.....|.|.:..||:  :|...:|.:.::.
  Fly   141 VRAGRVIERALSENV--DIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWST 203

  Fly   370 SYYDLFAVCFGSHDFMKQTNEGYLCLFTVK-NPSFPDYIIQTDCGVMCCDIHPTYPFLAVIGLYD 433
            .:..|....:.:::......:|.:.::..| ..|.|:.:......||........|.|.:.|.|.
  Fly   204 HFPKLVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYS 268

  Fly   434 GNVAVYNLREDCKEPLY---VSRGVNCKHGECVWQIKWGLDMADGEVNFFSVSSDGRVFNWILMQ 495
            |.:.:::.|...:.|:.   :|...:.....|:..:  |...|.   |..|:||||::.:|.|  
  Fly   269 GQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMV--GTQNAH---NVISISSDGKLCSWSL-- 326

  Fly   496 NKLWVTTIITLYRENGLVDGPDGTKVTLKSGGS------CMVFHPVDNKIFLVGTECGYIYKCST 554
                           .::..|..| :.|:...|      .|.|...:....::|:|.||:|..|.
  Fly   327 ---------------DMLSQPQDT-LELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASR 375

  Fly   555 -AFSSKYLMTYYAHNMSVYRID--FNRFN---SNIFVSCGADWMVKVWEDMRP------------ 601
             ...|.....|..|...:..|.  :|:.:   .::|::..    :|:|....|            
  Fly   376 HGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSS----IKIWSLKLPISSCQFSVVSGI 436

  Fly   602 ---DPLFIF-DLGAAVGDVKWAPYSSTVFAAVTTEGKVHVFDLNVNKYKAICIQAVVPKRKNKLT 662
               .||:.| |....:.||.|:|....:||||...|::.::  |:|:...:...::|......|.
  Fly   437 NSNKPLYSFEDNSDYMMDVAWSPVHPALFAAVDGSGRLDLW--NLNQDTEVPTASIVVAGAPALN 499

  Fly   663 RLSFNEKLAFIVVGDEKGVTTSLKLSPNLRMMVKPPKKQLYLDQN 707
            |:|:......:.:|||.|......::.||   .:|.:.::.::|:
  Fly   500 RVSWTPSGLHVCIGDEAGKLYVYDVAENL---AQPSRDEIKMNQS 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9313NP_001286657.1 WD40 <353..706 CDD:225201 77/386 (20%)
WD40 repeat 362..412 CDD:293791 6/50 (12%)
WD40 413..640 CDD:295369 55/257 (21%)
WD40 repeat 415..454 CDD:293791 9/41 (22%)
WD40 repeat 463..505 CDD:293791 10/41 (24%)
WD40 repeat 513..557 CDD:293791 12/50 (24%)
WD40 repeat 571..608 CDD:293791 9/57 (16%)
WD40 repeat 613..654 CDD:293791 11/40 (28%)
SdicCNP_001303578.1 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 18/71 (25%)
WD40 196..523 CDD:295369 71/355 (20%)
WD40 repeat 196..245 CDD:293791 6/48 (13%)
WD40 <224..534 CDD:225201 72/341 (21%)
WD40 repeat 251..289 CDD:293791 7/37 (19%)
WD40 repeat 298..337 CDD:293791 13/61 (21%)
WD40 repeat 349..386 CDD:293791 9/36 (25%)
WD40 repeat 393..446 CDD:293791 8/56 (14%)
WD40 repeat 452..491 CDD:293791 11/40 (28%)
WD40 repeat 498..522 CDD:293791 7/23 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45435254
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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