DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9344 and LSM1B

DIOPT Version :10

Sequence 1:NP_611528.1 Gene:CG9344 / 37372 FlyBaseID:FBgn0034564 Length:79 Species:Drosophila melanogaster
Sequence 2:NP_566476.1 Gene:LSM1B / 820624 AraportID:AT3G14080 Length:128 Species:Arabidopsis thaliana


Alignment Length:73 Identity:21/73 - (28%)
Similarity:33/73 - (45%) Gaps:13/73 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLE-QTEEYVNGQLKNKYGDA-----FI 64
            :|:.:::    |.:.|.|.:|....|.|...|.:.|..|| ..|..:.|:   :|.|.     .|
plant    14 SLASYLD----RKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGE---QYCDIPLGLYVI 71

  Fly    65 RGNNVLYI 72
            ||.||:.|
plant    72 RGENVVLI 79

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9344NP_611528.1 LSm6 8..73 CDD:212473 20/71 (28%)
LSM1BNP_566476.1 LSm1 12..82 CDD:212475 21/73 (29%)

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