DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9344 and SmD2

DIOPT Version :9

Sequence 1:NP_611528.1 Gene:CG9344 / 37372 FlyBaseID:FBgn0034564 Length:79 Species:Drosophila melanogaster
Sequence 2:NP_649645.1 Gene:SmD2 / 40781 FlyBaseID:FBgn0261789 Length:119 Species:Drosophila melanogaster


Alignment Length:68 Identity:15/68 - (22%)
Similarity:26/68 - (38%) Gaps:14/68 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 VAVKLNNGVDYRGVLACLDGYMNICLEQTEEY-----VNGQLKNK---------YGDAFIRGNNV 69
            |.:...|.....|.:...|.:.|:.||..:|.     ..|:.|.|         ....|:||::|
  Fly    41 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSV 105

  Fly    70 LYI 72
            :.:
  Fly   106 ILV 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9344NP_611528.1 LSm6 8..73 CDD:212473 15/68 (22%)
SmD2NP_649645.1 Sm_D2 23..112 CDD:212467 15/68 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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