DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9344 and lsm-5

DIOPT Version :10

Sequence 1:NP_611528.1 Gene:CG9344 / 37372 FlyBaseID:FBgn0034564 Length:79 Species:Drosophila melanogaster
Sequence 2:NP_001366865.1 Gene:lsm-5 / 180047 WormBaseID:WBGene00003079 Length:91 Species:Caenorhabditis elegans


Alignment Length:64 Identity:18/64 - (28%)
Similarity:30/64 - (46%) Gaps:3/64 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVN---GQLKNKYGDAFIRGNNV 69
            :.|::..|..:.|.:.|..:..|.|...|.|:|:.||...||.|   |:...|.....:.||::
 Worm    16 ELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGNHI 79

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9344NP_611528.1 LSm6 8..73 CDD:212473 18/64 (28%)
lsm-5NP_001366865.1 LSm5 11..86 CDD:212479 18/64 (28%)

Return to query results.
Submit another query.