DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KCNA2 and Shawl

DIOPT Version :9

Sequence 1:NP_004965.1 Gene:KCNA2 / 3737 HGNCID:6220 Length:499 Species:Homo sapiens
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:510 Identity:168/510 - (32%)
Similarity:245/510 - (48%) Gaps:139/510 - (27%)


- Green bases have known domain annotations that are detailed below.


Human    34 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRL 98
            |:::|:||:|:||...||.:.|.|.|....:.:..:||:.|||||||:...|..||.||:: |:|
  Fly     6 RIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRT-GKL 69

Human    99 RRPVNVPLDIFSEEIRFYELGEEAME--------MFREDEGYIK-------EEERPLPE------ 142
            ..|.:|...:|.||:.|:.|....:|        :.|:.:..:.       |.|:|..|      
  Fly    70 HYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQIARLF 134

Human   143 -----------NEFQR---QVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDE-- 191
                       |.:||   ::|.:|:.|.||..|:|:|.:||..|.:|::||||:|.|.||.:  
  Fly   135 GFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPGFRVDLP 199

Human   192 --NEDMHGSGV-----------------TFHTYS----NSTIG---------YQQSTSFT----- 219
              ..|.||.|.                 .:|.:|    :.:||         ...|.:||     
  Fly   200 SGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGNFTASGQA 264

Human   220 --------------------------------------------------DPFFIVETLCIIWFS 234
                                                              :.||.||.:|.:||.
  Fly   265 TPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVELVCNVWFF 329

Human   235 FEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLV 299
            .|.::|....|:...|..:.:||||..|.:.::..:...:.|            ...:|....:|
  Fly   330 IEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRMGE------------YTGLLEAFSIV 382

Human   300 RVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE--ADERESQFPSIP 362
            |:.|:|||:|||.||:||..|.|||.:||.||:|||.:|::.|:|..|:||  .|..::||.|||
  Fly   383 RIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQFKSIP 447

Human   363 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417
            ...|||:|:||||||||:.|.|..|..||:|||:|||||||||||||||||:.||
  Fly   448 LGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFY 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNA2NP_004965.1 Tetramerization domain. /evidence=ECO:0000250|UniProtKB:P63142 1..125 36/98 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
BTB_POZ 33..159 CDD:365784 47/159 (30%)
Ion_trans 162..420 CDD:395416 119/347 (34%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 312..325 7/12 (58%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 374..379 4/4 (100%)
PDZ-binding. /evidence=ECO:0000250|UniProtKB:P63142 497..499
ShawlNP_001097131.2 BTB 7..99 CDD:197585 35/92 (38%)
BTB_2 7..97 CDD:280393 35/90 (39%)
Ion_trans 307..506 CDD:278921 93/208 (45%)
Ion_trans_2 <449..499 CDD:285168 36/49 (73%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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