DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KCNA2 and Shab

DIOPT Version :9

Sequence 1:NP_004965.1 Gene:KCNA2 / 3737 HGNCID:6220 Length:499 Species:Homo sapiens
Sequence 2:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster


Alignment Length:481 Identity:173/481 - (35%)
Similarity:259/481 - (53%) Gaps:90/481 - (18%)


- Green bases have known domain annotations that are detailed below.


Human    34 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRY-------------FDPLRNEYFFDRNRPSF 85
            ||.||:.|:|.|...:||.:.|.|.||    |:|.             :....|||||||:..||
  Fly   308 RVSINVGGVRHEVLWRTLERLPHTRLG----RLRECTTHEAIVELCDDYSLADNEYFFDRHPKSF 368

Human    86 DAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAM-----------------EMFREDEGYI 133
            .:||.:|:: |:|.....:.:..||:::.::.:.|..:                 ||.:|.|...
  Fly   369 SSILNFYRT-GKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLR 432

Human   134 KEEERPLPEN---EFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDM 195
            :.:|....|.   |:|:.:|.|.|.|.:|..||:||::|::.|::|.::..|.|||..:.     
  Fly   433 QRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQH----- 492

Human   196 HGSGVTFHTYSNSTIGYQQSTSFTDP-FFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIID 259
                            ....|...:| ..:||.:||.||:.|:::||.|.|.|..||...:||||
  Fly   493 ----------------IDNGTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIID 541

Human   260 IVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKAS 324
            ::||:|||::|  .|.|..::|....|.:. .:::|.|::|:.||.||:|||.|||.||.||:.|
  Fly   542 LLAILPYFVSL--FLLETNKNATDQFQDVR-RVVQVFRIMRILRILKLARHSTGLQSLGFTLRNS 603

Human   325 MRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 389
            .:|||||:.||.:||::|||..||||.||::::|.|||:.||||.::||||||||:.|||..||:
  Fly   604 YKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKV 668

Human   390 VGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPDLKKSRSASTIS 454
            :|::|.|.|||.||||:|:||:||..||..:...|:..                  |.|.|...:
  Fly   669 IGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKAL------------------KRREALDRA 715

Human   455 KSDYMEIQEGVNNSNEDFREENLKTA 480
            |      :||   |...|...|||.|
  Fly   716 K------REG---SIVSFHHINLKDA 732

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNA2NP_004965.1 Tetramerization domain. /evidence=ECO:0000250|UniProtKB:P63142 1..125 32/120 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
BTB_POZ 33..159 CDD:365784 44/157 (28%)
Ion_trans 162..420 CDD:395416 115/258 (45%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 312..325 7/12 (58%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 374..379 4/4 (100%)
PDZ-binding. /evidence=ECO:0000250|UniProtKB:P63142 497..499
ShabNP_001189037.1 BTB 309..416 CDD:197585 31/111 (28%)
BTB_2 309..408 CDD:280393 31/103 (30%)
Ion_trans 501..700 CDD:278921 103/201 (51%)
Ion_trans_2 613..696 CDD:285168 49/82 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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