DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and crx

DIOPT Version :10

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_001016021.1 Gene:crx / 548775 XenbaseID:XB-GENE-478452 Length:290 Species:Xenopus tropicalis


Alignment Length:255 Identity:78/255 - (30%)
Similarity:110/255 - (43%) Gaps:47/255 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   557 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSE 621
            :|.||.|||||..||..||..|.|:.|||::.|||:|:|:||||.||||||:|||||.|:|::..
 Frog    36 RKQRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQS 100

  Fly   622 SLRLGLTHFTQLPHRLGCGASGLPVDPWLSPP----LLSALPGFLSHPQTVYPSYLTPPLSLAPG 682
            :.:                |...|.....||.    ..::..|..|.|.   |.....|.|.|..
 Frog   101 TGQ----------------AKPRPAKKKTSPARETNSEASTNGQYSPPP---PGTAVTPSSTASA 146

  Fly   683 NLTMSSLAAMGHHHAHNGPPPPHVG-------HGGHGQPQPPPPPPPHGVPHPHGSHHVVPL--- 737
            .:::.|.|::       .|.|..:.       ....|.|......|.:...:...|.:...|   
 Frog   147 TVSIWSPASI-------SPIPDPLSAATTPCMQRSAGYPMTYSQAPAYTQSYGGSSSYFTGLDCG 204

  Fly   738 SHLSPHLSRMSPHATSLGSPHHGVTPLGTPLHSSLPPSSTATTVAVSSSQSSSSSASLEC 797
            |:|||    |.|   .|.:|...::|:.||...|....|.|:..|.....||....|::|
 Frog   205 SYLSP----MHP---QLSAPGATLSPIATPTMGSHLSQSPASLSAQGYGASSLGFTSVDC 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeodomain 560..616 CDD:459649 36/55 (65%)
OAR 876..892 CDD:461067
crxNP_001016021.1 Homeodomain 39..94 CDD:459649 36/54 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..144 12/69 (17%)
TF_Otx 152..236 CDD:427350 21/97 (22%)
Blue background indicates that the domain is not in the aligned region.

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