DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and pitx1

DIOPT Version :9

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_001007500.1 Gene:pitx1 / 493226 XenbaseID:XB-GENE-485441 Length:305 Species:Xenopus tropicalis


Alignment Length:312 Identity:95/312 - (30%)
Similarity:145/312 - (46%) Gaps:52/312 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   498 PNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQTNSSEQGEKITSG---SDDEGQDDNCAKKKH 559
            |:.:..:..|.:|.:...|.:.|.:..||:       :|..||..||   .:|...||...|||.
 Frog    21 PSHDMATSFHLQRSSEARDPMDNSASESSD-------TEIAEKERSGEPKGEDGNGDDPTKKKKQ 78

  Fly   560 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLR 624
            ||.||.||:.||.|||..|:::.|||:..|||:|:..||.|.||:|||:|||||||::|:::.:.
 Frog    79 RRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQMD 143

  Fly   625 L----GLTHFTQLPHRLGCGASGLPVDPWLSPPLLSALPGFLSHPQTVYPSYLTP--PLSLAPGN 683
            |    .:..|:.|........:|.|.:.|.:.   |..|..||.....:.:.::|  ..|:..|.
 Frog   144 LCKNGYVPQFSGLMQPYDEMYAGYPYNNWATK---SLTPAPLSTKSFTFFNSMSPLSSQSMFSGP 205

  Fly   684 LTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVP-HPHGS-HHVVPLSHLSPHL-- 744
            .::||::.           |..:||.              .|| .|:.| :::..|:::|...  
 Frog   206 SSISSMSM-----------PSSMGHS--------------AVPGMPNSSLNNINNLNNISSSSLN 245

  Fly   745 SRMSPHATSLGSPHHGVTPLGTPLHSSLP----PSSTATTVAVSSSQSSSSS 792
            |.||..|...|.|....|......:|||.    .|...:|...||.||.:||
 Frog   246 SAMSSTACPYGPPGSPYTVYRDTCNSSLASLRLKSKQHSTFGYSSLQSPASS 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeobox 563..615 CDD:278475 30/51 (59%)
OAR 876..892 CDD:281777
pitx1NP_001007500.1 Homeobox 82..135 CDD:365835 31/52 (60%)
OAR 267..285 CDD:367680 4/17 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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