Protein Alignment Rx and abd-A

DIOPT Version :10

• Sequence 1: NP_726006.3
• Gene: Rx / 37367
• FlyBaseID: FBgn0020617
• Length: 904
• Species: Drosophila melanogaster
• Sequence 2: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 505
• Identity: 107/505 - (21%)
• Similarity: 172/505 - (34%)
• Gaps: 151/505 - (29%)

  Fly   157 NRNGAANGSGRNPETVSDGSVDPSLGDDDATDLRCGMTLTQLRSMDNHMASMLQQHAKNGGALPY 221
            |.|.:...:|.|....::.|..||...::.::|..                       :||:|
  Fly    59 NNNSSNTIAGSNTSNTNNSSSSPSSSSNNNSNLNL-----------------------SGGSL-- 98

  Fly   222 GPPTPPGGQQPQVPNATPLHHGQQMGGQAGHATHAGHGHPTHHGHAPFGYHNAFGFGQGGHGYGH 286
                            :|.|..|.: ||:.|:..:        ..:||..|             |
  Fly    99 ----------------SPSHLSQHL-GQSPHSPVS--------SSSPFQQH-------------H 125

  Fly   287 PEEAAGNYLNSMHQMVEANQLQTGANGANPPPAPLPPSSFGSHQQHLAALAAQAQEQQNQH--SK 349
            | :....:||...|....:|.|                   .|....::|:|..|.||.||  ||
  Fly   126 P-QVQQQHLNHQQQQHLHHQQQ-------------------QHHHQYSSLSAALQLQQQQHHISK 170

  Fly   350 YAKSSPTGAGPP------PPPGAYFMESQTAPVAPSQINYDERSMSSASDLEEDDDD------AA 402
            .|.::....|..      .||.|...::..:..:||.      |.|.:|.|....:|      :|
  Fly   171 LAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCSPSP------SASGSSSLHRSLNDNSPGSASA 229

  Fly   403 KLQLDVTSPPTPSPRGQLAAKRKSAGVFCDDNEPKLAN-----GQLPG--GNYGIRPRSMEEVHH 460
            .......|....:.....||...|..:......|.::|     |.|.|  |..|:..:|......
  Fly   230 SASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTD 294

  Fly   461 QQQSHHHQQQQQQQQQQQQLQQQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVNGSC-- 523
            ...:.:   |..........|..|.:||   .:...:....:::|..|      .|||.| :|
  Fly   295 TVMNSY---QSMSVPASASAQFAQFYQH---ATAAASAVSAASAGAIG------VDSLGN-ACTQ 346

  Fly   524 --------------ASSEDLNQ----TNSSEQG---EKITSGSDDEGQDDNCAKKKHRRNRTTFT 567
                          |...||.:    |.:...|   |::..|  |....:.|.:   ||.|.|:|
  Fly   347 PASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCG--DFNGPNGCPR---RRGRQTYT 406

  Fly   568 TYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 617
            .:|..|||:.|..:||.....|.|:|..:.|.|.::::||||||.|.:::
  Fly   407 RFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 456

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rx	NP_726006.3	Homeodomain	560..616	CDD:459649	24/55 (44%)
		OAR	876..892	CDD:461067
abd-A	NP_732176.1	Homeodomain	399..455	CDD:459649	24/55 (44%)
		Abdominal-A	456..478	CDD:403567	0/1 (0%)