DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and Antp

DIOPT Version :10

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster


Alignment Length:442 Identity:100/442 - (22%)
Similarity:147/442 - (33%) Gaps:123/442 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 THAGHGHPTHHGHAPFGYHNAFGFG------QGGHGYGHPEEAAGNYLNSMHQMVEANQLQTGAN 312
            |::..|...||||.|       |.|      |..|.|..         |:.||            
  Fly    16 TNSYMGADMHHGHYP-------GNGVTDLDAQQMHHYSQ---------NANHQ------------ 52

  Fly   313 GANPPPAPLPPSSFGSHQQHLAALAAQAQEQQNQHSKYAK-SSPT----GAGPPPPPGAYF---M 369
             .|.|....||      ...:.....|..:||.||..|:: .||:    |..|........   .
  Fly    53 -GNMPYPRFPP------YDRMPYYNGQGMDQQQQHQVYSRPDSPSSQVGGVMPQAQTNGQLGVPQ 110

  Fly   370 ESQTAPVAPSQINYDERSMSSASDLEEDDDDAAKLQLDVTSP------PTPSPRGQLAAKRKSAG 428
            :.|.....|||....:::..:...|::   ...::...||.|      |......:|.|.....|
  Fly   111 QQQQQQQQPSQNQQQQQAQQAPQQLQQ---QLPQVTQQVTHPQQQQQQPVVYASCKLQAAVGGLG 172

  Fly   429 VFCDDNEPKLA--------NGQL--------PGGNYGIRPRSMEEVHHQQQSHHHQQQQQQQQQQ 477
            :..:...|.|.        |.|:        |....|.....:.:|....|:||:....|||...
  Fly   173 MVPEGGSPPLVDQMSGHHMNAQMTLPHHMGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQSGV 237

  Fly   478 QQL-QQQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQTNSSEQGEKI 541
            ..: ...||..|    .|.|.|  ..:.|..|:                     .|..|:.....
  Fly   238 PPVGAPPQGMMH----QGQGPP--QMHQGHPGQ---------------------HTPPSQNPNSQ 275

  Fly   542 TSGSDD------EGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 600
            :||...      ..|...|.::|  |.|.|:|.||..|||:.|..:.|.....|.|:|..:.|.|
  Fly   276 SSGMPSPLYPWMRSQFGKCQERK--RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 338

  Fly   601 VRVQVWFQNRRAKWRRQEKSESLRLGLTHFTQLPHRLGCGASGLPVDPWLSP 652
            .::::||||||.||:::.|::.             ..|.|..|..:.|..||
  Fly   339 RQIKIWFQNRRMKWKKENKTKG-------------EPGSGGEGDEITPPNSP 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeodomain 560..616 CDD:459649 24/55 (44%)
OAR 876..892 CDD:461067
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 34/173 (20%)
Homeodomain 298..354 CDD:459649 25/57 (44%)
Blue background indicates that the domain is not in the aligned region.

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