DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and Rhox12

DIOPT Version :9

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_001020254.1 Gene:Rhox12 / 382282 MGIID:2685994 Length:186 Species:Mus musculus


Alignment Length:179 Identity:52/179 - (29%)
Similarity:90/179 - (50%) Gaps:18/179 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   457 EVHHQQQSHHHQQQQQQQQQQQQLQQQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVN- 520
            |.||...:.:...:.:.:......|:..| ..:..:.|:|:.||:......|  :..|.|.::. 
Mouse     4 EPHHVDPNFYKLGENEIEVTLDADQEADG-AAEGGSFGDGSLNGSDKLKCQG--IPDDKDDVIYV 65

  Fly   521 GSCAS-SEDL-NQTNSSEQGEKITSG--SDDEGQDDNCAKKKHRRNRTT------FTTYQLHELE 575
            |...: ..|: ::.:.|.||    ||  ..:|.|.::.|.:..:..||.      ||..||:|||
Mouse    66 GELKNIGNDIKDECHGSHQG----SGDPQPEEKQKNSAAARVPQVRRTRPRIQLGFTPRQLNELE 126

  Fly   576 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLR 624
            ..|||:.|||..:|:.||..:.|.|.:||.||:.|||.:|::::|:.|:
Mouse   127 DFFEKTKYPDALTRKNLAKHLYLAESKVQRWFKKRRAHYRKEQQSQVLQ 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeobox 563..615 CDD:278475 27/57 (47%)
OAR 876..892 CDD:281777
Rhox12NP_001020254.1 homeodomain 107..169 CDD:238039 28/61 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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