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Protein Alignment Rx and Rhox12
DIOPT Version :9
Sequence 1: | NP_726006.3 |
Gene: | Rx / 37367 |
FlyBaseID: | FBgn0020617 |
Length: | 904 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001020254.1 |
Gene: | Rhox12 / 382282 |
MGIID: | 2685994 |
Length: | 186 |
Species: | Mus musculus |
Alignment Length: | 179 |
Identity: | 52/179 - (29%) |
Similarity: | 90/179 - (50%) |
Gaps: | 18/179 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 457 EVHHQQQSHHHQQQQQQQQQQQQLQQQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVN- 520
|.||...:.:...:.:.:......|:..| ..:..:.|:|:.||:......| :..|.|.::.
Mouse 4 EPHHVDPNFYKLGENEIEVTLDADQEADG-AAEGGSFGDGSLNGSDKLKCQG--IPDDKDDVIYV 65
Fly 521 GSCAS-SEDL-NQTNSSEQGEKITSG--SDDEGQDDNCAKKKHRRNRTT------FTTYQLHELE 575
|...: ..|: ::.:.|.|| || ..:|.|.::.|.:..:..||. ||..||:|||
Mouse 66 GELKNIGNDIKDECHGSHQG----SGDPQPEEKQKNSAAARVPQVRRTRPRIQLGFTPRQLNELE 126
Fly 576 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLR 624
..|||:.|||..:|:.||..:.|.|.:||.||:.|||.:|::::|:.|:
Mouse 127 DFFEKTKYPDALTRKNLAKHLYLAESKVQRWFKKRRAHYRKEQQSQVLQ 175
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Rx | NP_726006.3 |
Homeobox |
563..615 |
CDD:278475 |
27/57 (47%) |
OAR |
876..892 |
CDD:281777 |
|
Rhox12 | NP_001020254.1 |
homeodomain |
107..169 |
CDD:238039 |
28/61 (46%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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