DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and lms

DIOPT Version :10

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster


Alignment Length:416 Identity:107/416 - (25%)
Similarity:153/416 - (36%) Gaps:107/416 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   489 DFRNSGNGNPNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQTNSSEQGEKITSGSDD-EGQDD 552
            :.|:|.:...:....||..|..|.|...|    |.|:|..|:. |..:....|...||| .|..|
  Fly    24 EMRSSTSFEDSVQDESGRGGNCLGASRAS----SPATSSCLDD-NMDDGKSDIDLASDDGNGLGD 83

  Fly   553 NCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 617
            :    :.:|.||.|:..|:..||..||:..|..|..|..||.::.|.|.::::||||||.||:|:
  Fly    84 D----RKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRK 144

  Fly   618 EKSESLRLGLTHFTQLPHRLGCGASGLPV----DPWLSPPLLSALPGFLSHPQTVYPSYLTPPLS 678
            ..|:...|...::.|    ||.|....|:    ..|    |.|..|   :.|..:....|....|
  Fly   145 YTSDVETLASHYYAQ----LGIGGLARPMVVGDRLW----LFSQTP---TGPTPIQSIMLNGSGS 198

  Fly   679 LAPGNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPP---------------------P 722
            .||    |:|...     |...|..|:...||    .||.|.|                     |
  Fly   199 AAP----MASATT-----ATGSPMRPYATSGG----MPPLPGPSVMESARNAILARGQPLNFALP 250

  Fly   723 HGVPHPHGSHHVVPLSHLSPHLSRMSPHATSLGSPHHGVTPLGTPLHSSLPPSST------ATTV 781
            .||..|....  ||.:...|   |..|:|||.           ....:|||.:.:      ||..
  Fly   251 FGVAKPPAGG--VPAASYIP---RCKPYATSY-----------VDYAASLPTNESYLQMKYATLP 299

  Fly   782 AVSSSQSSSSSASLECSGPDVCMSPQNLSIGNADSN----------GDGRDLSSD-LDAGSTSSN 835
            ..:.|.:|:..|.||            ...|:|::|          |.......| |:....|..
  Fly   300 PEAESGASNGLAELE------------RVFGDANANFLQQRSTPVAGTATAYGHDGLNQAQRSRR 352

  Fly   836 PGSSLDKCAASANIELLDVGRDSPPP 861
            |..|..:|   ::|:...:..|..||
  Fly   353 PTQSESEC---SDIDCEHLDEDEEPP 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeodomain 560..616 CDD:459649 24/55 (44%)
OAR 876..892 CDD:461067
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 24/81 (30%)
Homeodomain 87..143 CDD:459649 24/55 (44%)
Blue background indicates that the domain is not in the aligned region.

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