DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rx and Alx3

DIOPT Version :10

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_001007013.2 Gene:Alx3 / 365900 RGDID:1359270 Length:343 Species:Rattus norvegicus


Alignment Length:419 Identity:113/419 - (26%)
Similarity:157/419 - (37%) Gaps:111/419 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   352 KSSPTGAGPPPPPGAYFMESQTAPVAPSQINYDERSMSSASDLEEDDDDAAKLQLDVTSPPTPSP 416
            :.:|...||...|.|...:....|                   :...|.|..|:      |.| |
  Rat     5 RCAPFAVGPAAGPYAAARDEAPGP-------------------QGTPDAAPHLR------PAP-P 43

  Fly   417 RGQLAAKRKSAGVFCDDNEPKLANGQLPGGNY----GIRPRSMEEVHHQQQSHHHQQQQQQQQQQ 477
            ||    .|.|....|...||.|.....|...|    |..| .:...|..:.|...:::..:....
  Rat    44 RG----PRLSRFPACGPLEPYLPEPAKPPAKYLQDLGPGP-VLNGGHFYKGSSEAEEKASKAASF 103

  Fly   478 QQLQQQ-QGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQTNSSEQGEKI 541
            .||... :|...|..::..|:|                      |.|.:|..:          .:
  Rat   104 PQLPVDCRGGPRDGPSNVQGSP----------------------GPCLASLSV----------PL 136

  Fly   542 TSGSDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVW 606
            :.|..| ..:...:|.|.|||||||:|:||.|||:.|:|:||||||:||:||::.:|.|.|||||
  Rat   137 SPGLPD-SMELAKSKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVW 200

  Fly   607 FQNRRAKWRRQEKSESLRLGLTHFTQLPHRLGCGASGLPVDPWLSPPLLSALPGFLSHPQTVYPS 671
            |||||||||::|:...::.|...||....                   :|.||...||||.....
  Rat   201 FQNRRAKWRKRERYGKIQEGRNPFTTAYD-------------------ISVLPRTDSHPQLQNSL 246

  Fly   672 YLTP-------PLSLAPGNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPP----HGV 725
            :.:|       |..:.|..:....::...|.|.:..        |..|.|..|...|.    ||.
  Rat   247 WSSPGSGSPGGPCLMPPEGIPSPCMSPYSHSHGNVA--------GFMGVPASPAAHPGIYSIHGF 303

  Fly   726 PHPHGSHHVVPLSHLSPHLSRMSPHATSL 754
            |...|.|...|    ||.....||...||
  Rat   304 PPALGGHSFEP----SPDGDYKSPSLVSL 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeodomain 560..616 CDD:459649 40/55 (73%)
OAR 876..892 CDD:461067
Alx3NP_001007013.2 Homeodomain 154..210 CDD:459649 40/55 (73%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.