DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and CG11294

DIOPT Version :10

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_572500.1 Gene:CG11294 / 31807 FlyBaseID:FBgn0030058 Length:261 Species:Drosophila melanogaster


Alignment Length:289 Identity:87/289 - (30%)
Similarity:123/289 - (42%) Gaps:83/289 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   556 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKS 620
            :::.||||||||..||.|||..|:|:|||||:.|||:|::::|.|.||||||||||||||:|.:.
  Fly    21 RRRQRRNRTTFTPQQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQARL 85

  Fly   621 ESLRLGLTHFTQLPHRLGCGASGLPVDPWLSPPLL--SALPGFLSHPQTVYPSYLTPP-LSLAPG 682
            :.|        |...|:.|.:.|       :||::  .|:.|...:..|..|...||. ||.|..
  Fly    86 QLL--------QDAWRMRCLSLG-------TPPVMGGGAVQGGSGNGATARPPSQTPENLSSASK 135

  Fly   683 NLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVPHPHGSHHVVPLSHLSPHLSRM 747
            :   |.||.:|     |||      :.|......|.....|......|.........||...:.:
  Fly   136 D---SELAEVG-----NGP------NSGSFTMMHPAFQQQHQQQQHQGHQQATDQDKLSKTYTEL 186

  Fly   748 SPHATSLGSPHHGVTPLGTPLHSSLPPSSTATTVAVSSSQSSSSSASLECSGPDVCMSPQNLSIG 812
            ..:.    :|.||: .||                         ..|:|.               |
  Fly   187 KLYK----APSHGM-ELG-------------------------GMAALS---------------G 206

  Fly   813 NADSNGDGRDLSSDLDAGSTSSNPGSSLD 841
            ::|...||.| |.::|..|     |:.:|
  Fly   207 HSDEGSDGSD-SEEIDLTS-----GACID 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeodomain 560..616 CDD:459649 39/55 (71%)
OAR 876..892 CDD:461067
CG11294NP_572500.1 Homeodomain 29..81 CDD:459649 35/51 (69%)
Blue background indicates that the domain is not in the aligned region.

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