DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and VSX1

DIOPT Version :10

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_055403.2 Gene:VSX1 / 30813 HGNCID:12723 Length:365 Species:Homo sapiens


Alignment Length:129 Identity:61/129 - (47%)
Similarity:74/129 - (57%) Gaps:20/129 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   542 TSGSDDEGQDDN-------CAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLP 599
            ||..|.:.:|.|       ..|:|.||:||.||.:||.|||:||.::||||||:||.||:|..||
Human   140 TSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELP 204

  Fly   600 EVRVQVWFQNRRAKWRRQEK-----SESLRLGL-----THFTQLPHR-LGCGASGL--PVDPWL 650
            |.|:||||||||||||::||     |.....||     .|...||.. |.....||  ...|||
Human   205 EDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWL 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeodomain 560..616 CDD:459649 39/55 (71%)
OAR 876..892 CDD:461067
VSX1NP_055403.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Octapeptide motif 31..38
PRK14959 <47..>149 CDD:184923 3/8 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 113..167 8/26 (31%)
Nuclear localization signal. /evidence=ECO:0000255 161..166 2/4 (50%)
Homeodomain 165..221 CDD:459649 39/55 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 290..365
Blue background indicates that the domain is not in the aligned region.

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