DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rx and Alx1

DIOPT Version :9

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_766141.1 Gene:Alx1 / 216285 MGIID:104621 Length:326 Species:Mus musculus


Alignment Length:446 Identity:108/446 - (24%)
Similarity:157/446 - (35%) Gaps:180/446 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   487 QHDFRNSGNGNPNGNSNSG------------DHGERLNADS---DSLVNGSCASSE------DLN 530
            :|......|.:..|.:.:|            :|..||:..|   ||.||......|      :||
Mouse    29 EHVMETLDNESFYGKATAGKCVQAFGPLPRAEHHVRLDRTSPCQDSSVNYGITKVEGQPLHTELN 93

  Fly   531 QT--------NSSEQGEKITSGSDDEGQ--DDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPD 585
            :.        .|..:|....|..|:.|.  |.|.:..|.||:|||||:.||.|||:.|:|:||||
Mouse    94 RAMDNCNNLRMSPVKGMPEKSELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPD 158

  Fly   586 VYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLTHFTQLPHRLGCGASGLPVDPWL 650
            ||.||:||::..|.|.||||||||||||||::|:...::...:||.....               
Mouse   159 VYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYD--------------- 208

  Fly   651 SPPLLSALPGFLSHPQTVYPSYLTPPLSLAPGNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQ 715
                :|.||...|:||.        ..:|..||.:..|:..                        
Mouse   209 ----ISVLPRTDSYPQI--------QNNLWAGNASGGSVVT------------------------ 237

  Fly   716 PPPPPPPHGVPHPHGSHHVVPLSHLSPHLSRMSPH-ATSLGSPHHGVTPLGTPLHSSLPPSSTAT 779
                                         |.|.|. |:|..:|:.         ||   |.:.::
Mouse   238 -----------------------------SCMLPRDASSCMTPYS---------HS---PRTDSS 261

  Fly   780 TVAVSSSQSSSSSASLECSGPDVCMSPQNLSIGNADSNGDGRDLSSDLDAGSTSSNPGSSLDKCA 844
            ....|:.|:..|...|                        ....:..|..|:|:   |.:.:   
Mouse   262 YTGFSNHQNQFSHVPL------------------------NNFFTDSLLTGATN---GHAFE--- 296

  Fly   845 ASANIELLDVGRDSPPPPPTPTGKGSSTPPTDMRSNSIATLRIKAKEHLDNLNKGM 900
                                      :.|..:.||:|||.||:|||||..|::..|
Mouse   297 --------------------------TKPEFERRSSSIAVLRMKAKEHTANISWAM 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeobox 563..615 CDD:278475 36/51 (71%)
OAR 876..892 CDD:281777 10/15 (67%)
Alx1NP_766141.1 Homeobox 135..189 CDD:395001 37/53 (70%)
Transactivation domain. /evidence=ECO:0000250|UniProtKB:Q63087 192..326 43/281 (15%)
OAR 302..320 CDD:397759 12/17 (71%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 306..319 9/12 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454642at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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