DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and Pax3

DIOPT Version :10

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus


Alignment Length:273 Identity:92/273 - (33%)
Similarity:123/273 - (45%) Gaps:47/273 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   529 LNQTNSSEQGEKITSGSDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA 593
            |::..|:.|.::   |||.:.:.|...|:|.||:|||||..||.|||||||::||||:|:|||||
Mouse   192 LSERASAPQSDE---GSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELA 253

  Fly   594 MKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLTHF-------TQLPHRLGCGASGLPVDPWLS 651
            .:..|.|.||||||.||||:||:|..:..| :...|.       |.:|.......|.....|...
Mouse   254 QRAKLTEARVQVWFSNRRARWRKQAGANQL-MAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSI 317

  Fly   652 PPLLSALPGFLSHPQTVYPSYLTPPLSLAPGNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQP 716
            |..:|.....:..||.:.||  |...|..|.|...||...:           |...||.......
Mouse   318 PQAVSDPSSTVHRPQPLPPS--TVHQSTIPSNADSSSAYCL-----------PSTRHGFSSYTDS 369

  Fly   717 PPPPPPHGVPHPHGSHHVVPLSHLSPHLSR-MSPHATSL-----GSPHHGVTPLG-TPLHSSLPP 774
            ..||..             |.:.::|.:.. :||....|     |.||...|... :||...|.|
Mouse   370 FVPPSG-------------PSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEP 421

  Fly   775 SSTATTVAVSSSQ 787
            :   |||:.|.||
Mouse   422 T---TTVSASCSQ 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeodomain 560..616 CDD:459649 39/55 (71%)
OAR 876..892 CDD:461067
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 15/38 (39%)
Homeodomain 220..276 CDD:459649 39/55 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 11/43 (26%)
Pax7 347..391 CDD:403540 11/67 (16%)
Blue background indicates that the domain is not in the aligned region.

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