DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and Pitx1

DIOPT Version :9

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_446076.1 Gene:Pitx1 / 113983 RGDID:69253 Length:315 Species:Rattus norvegicus


Alignment Length:360 Identity:99/360 - (27%)
Similarity:145/360 - (40%) Gaps:114/360 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   513 ADSDSLVNGSCASSEDLNQTNSSEQGE-KI--TSGSDDEG---QDDNCAKKKHRRNRTTFTTYQL 571
            ||....:..|.:.|.|.:..:....|| |:  ..|:...|   .:|...|||.||.||.||:.||
  Rat    37 ADPREPLENSASESSDADLPDKERGGEAKVPEDGGAGSAGCGSAEDPAKKKKQRRQRTHFTSQQL 101

  Fly   572 HELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLRL----GLTHFTQ 632
            .|||..|:::.|||:..|||:|:..||.|.||:|||:|||||||::|:::.|.|    .:..|:.
  Rat   102 QELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQLDLCKGGYVPQFSG 166

  Fly   633 L--PHRLGCGASGLPVDPW----LSPPLLS-------------ALPGFLSHPQTVYPSYLTPPLS 678
            |  |:.....|:|...:.|    |:|..||             :.....|.|.::  |.:|.|.|
  Rat   167 LVQPYEDVYAAAGYSYNNWAAKSLAPAPLSTKSFTFFNSMSPLSSQSMFSAPSSI--SSMTMPSS 229

  Fly   679 LAPGNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVPHPHGSHHVVPLSHLSPH 743
            :.||::.                                      |:|: .|.:::..|:..|.:
  Rat   230 MGPGSVP--------------------------------------GMPN-SGLNNINNLTGSSLN 255

  Fly   744 LSRMSPHATSLGSPHHGVTPLGTPLHSSLPPSSTATTVAVSSSQSSSSSASLECSGPDVCMSPQN 808
             |.|||          |..|.|||          |:..:|.....:||.|||...      |.|:
  Rat   256 -SAMSP----------GACPYGTP----------ASPYSVYRDTCNSSLASLRLK------SKQH 293

  Fly   809 LSIGNADSNGDGRDLSSDLDAGSTSSNPGSSLDKC 843
            .|.|.....|                 |.|.|:.|
  Rat   294 SSFGYGGLQG-----------------PASGLNAC 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeobox 563..615 CDD:278475 30/51 (59%)
OAR 876..892 CDD:281777
Pitx1NP_446076.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..103 22/65 (34%)
Homeobox 93..146 CDD:395001 31/52 (60%)
Interaction with PIT-1. /evidence=ECO:0000250 149..280 36/192 (19%)
OAR 277..294 CDD:397759 7/22 (32%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 281..294 7/18 (39%)
Nuclear localization signal. /evidence=ECO:0000255 287..291 0/9 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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