DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and Prrxl1

DIOPT Version :9

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:XP_006518472.1 Gene:Prrxl1 / 107751 MGIID:2148204 Length:354 Species:Mus musculus


Alignment Length:503 Identity:126/503 - (25%)
Similarity:160/503 - (31%) Gaps:238/503 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   411 PPTPSPRGQLAA--------KRKSAGVFCDDNEPKLANGQLPGGNYGIRPRSMEEVHHQQQSHHH 467
            ||.|..|.||||        :.|||...     |.|..   |.|  .|||.:|...|...|.   
Mouse    50 PPKPIRRRQLAALCQAGATHRHKSARPL-----PALVQ---PSG--PIRPSAMFYFHCPPQL--- 101

  Fly   468 QQQQQQQQQQQQLQQQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQT 532
                                     .|.. |.||.::||.                         
Mouse   102 -------------------------EGTA-PFGNHSTGDF------------------------- 115

  Fly   533 NSSEQGEKITSGSDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN 597
                              ||...::|.||||||||..||..||..|.::|||||::|||||||:|
Mouse   116 ------------------DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKIN 162

  Fly   598 LPEVRVQVWFQNRRAKWRRQEKSESLRLGLTHFTQLPHRLGCGASGLPVDPWLSPPLLSALPGFL 662
            |.|.||||||||||||||:.|:                    |||  ..:|....|:....|   
Mouse   163 LTEARVQVWFQNRRAKWRKTER--------------------GAS--DQEPGAKEPMAEVTP--- 202

  Fly   663 SHPQTVYPSYLTPPL----SLAPGNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPH 723
                        ||:    |..||:.|.|...|:....                           
Mouse   203 ------------PPVRNINSPPPGDQTRSKKEALEAQQ--------------------------- 228

  Fly   724 GVPHPHGSHHVVPLSHLSPHLSRMSPHATSLGSPHHGVTPLGTPLHSSLPPS--STATTVAVSSS 786
                                         |||   ..|.|.|....|.||.:  :|||     .:
Mouse   229 -----------------------------SLG---RTVGPTGPFFPSCLPGTLLNTAT-----YA 256

  Fly   787 QSSSSSASLE------CSGPDV----------CMSPQNLSIG----NADSNGDGRDLSSDLDAGS 831
            |:.|..|||:      |..||.          |.|.:..|:.    .|..:.:....|::| ..|
Mouse   257 QALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVAALRMKAREHSEAVLQSANL-LPS 320

  Fly   832 TSSNPGSSLDKCAASANIELLDVGRDSPPPPPTPTGKGSSTPPTDMRS 879
            |||:||.:               .:.:|     |.|....|.||..:|
Mouse   321 TSSSPGPA---------------SKQAP-----PEGSQDKTSPTKEQS 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeobox 563..615 CDD:278475 37/51 (73%)
OAR 876..892 CDD:281777 1/4 (25%)
Prrxl1XP_006518472.1 Homeobox 128..181 CDD:365835 38/52 (73%)
OAR 292..309 CDD:367680 2/16 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454642at33208
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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