DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and gsc2

DIOPT Version :10

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:XP_017946465.2 Gene:gsc2 / 101734976 XenbaseID:XB-GENE-22064768 Length:181 Species:Xenopus tropicalis


Alignment Length:119 Identity:42/119 - (35%)
Similarity:63/119 - (52%) Gaps:31/119 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   501 NSNSGDHGERLNADSDSLVNGSCASSEDLNQTNSSEQGEKITSGSDDEGQDDNCAKKKHRRNRTT 565
            ::|.||.|..:..:..:|::        |..|                       :::.||:||.
 Frog    76 HANHGDAGAAVTVEPPTLLS--------LPHT-----------------------QRRTRRHRTI 109

  Fly   566 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 619
            ||..||..||:.|..:.||||.:||:||.::.|.|.||:|||:|||||||||::
 Frog   110 FTEDQLQALEQTFHHNQYPDVIAREQLAGRIQLKEERVEVWFKNRRAKWRRQKR 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeodomain 560..616 CDD:459649 32/55 (58%)
OAR 876..892 CDD:461067
gsc2XP_017946465.2 Homeodomain 109..160 CDD:459649 28/50 (56%)
Blue background indicates that the domain is not in the aligned region.

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