DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rx and prop1

DIOPT Version :10

Sequence 1:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster
Sequence 2:XP_004914810.1 Gene:prop1 / 101734397 XenbaseID:XB-GENE-22068967 Length:242 Species:Xenopus tropicalis


Alignment Length:242 Identity:73/242 - (30%)
Similarity:100/242 - (41%) Gaps:94/242 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   560 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLR 624
            ||:||||:..||..||.||.|:||||:|.|||||....|.|.|:||||||||||.|:.|::    
 Frog    67 RRHRTTFSQEQLEHLETAFSKNHYPDIYCREELAKITKLNEARIQVWFQNRRAKHRKHERT---- 127

  Fly   625 LGLTHFTQLP-HRLGCGA--SGL-----PVDPWLSPPLLSALPGFLSHPQTVYPSYLTPPLSLAP 681
               |..:.:| ..|.||:  ||:     |...:..|..|:.:|.|                    
 Frog   128 ---TQKSTVPSSMLTCGSLMSGMCSMSPPSRQYQYPHALNHIPRF-------------------- 169

  Fly   682 GNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVPHPHGSHHVVPLSHLSPHLSR 746
                 ||:::.|:|                         ||..|     |....|.:|  |||..
 Frog   170 -----SSMSSAGYH-------------------------PPSAV-----SQFTCPSNH--PHLQP 197

  Fly   747 MSPHA----------TSLGSPHHG-------VTPLGTPLHSSLPPSS 776
            ..|.:          .|:.||..|       :||:     ::|.||:
 Frog   198 AGPPSRQHDDWYNSLRSISSPGAGLSSSMITLTPV-----TALDPST 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RxNP_726006.3 Homeodomain 560..616 CDD:459649 36/55 (65%)
OAR 876..892 CDD:461067
prop1XP_004914810.1 Homeodomain 73..123 CDD:459649 31/49 (63%)
Blue background indicates that the domain is not in the aligned region.

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