DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CAH15 and Car5b

DIOPT Version :9

Sequence 1:NP_611525.1 Gene:CAH15 / 37366 FlyBaseID:FBgn0034560 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_851832.2 Gene:Car5b / 56078 MGIID:1926249 Length:317 Species:Mus musculus


Alignment Length:258 Identity:69/258 - (26%)
Similarity:113/258 - (43%) Gaps:38/258 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 PHTWDT-----ACNNQSPINI---------DMNCVEINYFDTPLIWSHYNSIPLGIRLENNGHTL 140
            |..|:.     |.:.||||||         .:..:.|:|  .|....|         :.|||::.
Mouse    49 PPLWENLDLVPAGDRQSPINIRWRDSVYDPGLKPLTISY--DPATCLH---------IWNNGYSF 102

  Fly   141 ILRAAFPERTPS--IDGGDLLGRFDFREISFRWSWASSLGSEHTLDHHHSPLEMQCLHTDG---- 199
            ::.  |.:.|..  ::||.|...:..::..|.|....:.|||||:|....|.|:..:|.:.    
Mouse   103 LVE--FEDSTDKSVVEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFE 165

  Fly   200 DGCDGCSSSQGVLMISYMFDLSEHNPFLDVLIQHLAAVEQAGQVVEVPPFPLSYLMSPFYDKFYS 264
            ...|......|:.:|.....|.:|:..|..|:..|.:::....:||...|..|.|| |....:::
Mouse   166 SFEDAALEENGLAVIGVFLKLGKHHKELQKLVDTLPSIKHKDTLVEFGSFDPSCLM-PTCPDYWT 229

  Fly   265 YNGSLTEPPCHRGAEWLIYPESLAISERQLNEFRQL----RDRRGSRIARNARPVQPIGDRMV 323
            |:||||.||......|:|..:.:.:...||.:||.|    ...:..|:..|.||:||:.:|.|
Mouse   230 YSGSLTTPPLSESVTWIIKKQPVEVDRDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRTV 292

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CAH15NP_611525.1 alpha_CARP_receptor_like 82..325 CDD:239396 69/258 (27%)
Car5bNP_851832.2 alpha_CA 61..296 CDD:294017 66/246 (27%)