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Protein Alignment CAH15 and Ca5a

DIOPT Version :9

Sequence 1:	NP_611525.1	Gene:	CAH15 / 37366	FlyBaseID:	FBgn0034560	Length:	332	Species:	Drosophila melanogaster
Sequence 2:	NP_062166.1	Gene:	Ca5a / 54233	RGDID:	2243	Length:	304	Species:	Rattus norvegicus

Alignment Length:	250	Identity:	67/250 - (26%)
Similarity:	98/250 - (39%)	Gaps:	47/250 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly   100 QSPINIDMNCVEINYFDTPLIWSHYNSIPLGIR--------LENNGHTLILRAAFPE--RTPSID 154
            ||||||...   .:.:|..|       .||.:.        |.|.|:  ..:..|.:  ....|.
  Rat    63 QSPINIQWT---DSVYDPKL-------APLRVSYDAASCRYLWNTGY--FFQVEFDDSCEESGIS 115

  Fly   155 GGDLLGRFDFREISFRWSWASSLGSEHTLDHHHSPLEMQCLH------------TDGDGCDGCSS 207
            ||.|...:..::..|.|......||||.:|.|..|.|:..:|            |.|:
  Rat   116 GGPLGNHYRLKQFHFHWGATDEWGSEHMVDGHAYPAELHLVHWNSMKYENYKKATTGE------- 173

  Fly   208 SQGVLMISYMFDLSEHNPFLDVLIQHLAAVEQAGQVVEVPPFPLSYLMSPFYDKFYSYNGSLTEP 272
             .|:.:|.....|..|:..|..|:..|..|......|.:.||..|.|: |....:::|.||||.|
  Rat   174 -NGLAVIGVFLKLGAHHEALQRLVDILPEVRHKDTQVTMGPFDPSCLL-PACRDYWTYPGSLTTP 236

  Fly   273 PCHRGAEWLIYPESLAISERQLNEFRQL----RDRRGSRIARNARPVQPIGDRMV 323
            |......|:::...:.:|..||:.||.|    |......:..|.||:||:..|.|
  Rat   237 PLAESVTWIVHKMPIEVSPSQLSTFRTLLFSGRGEDEEVMVNNFRPLQPLRGRNV 291

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.