back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CAH15 and Ca3

DIOPT Version :9

Sequence 1:	NP_611525.1	Gene:	CAH15 / 37366	FlyBaseID:	FBgn0034560	Length:	332	Species:	Drosophila melanogaster
Sequence 2:	NP_062165.2	Gene:	Ca3 / 54232	RGDID:	2241	Length:	260	Species:	Rattus norvegicus

Alignment Length:	261	Identity:	64/261 - (24%)
Similarity:	104/261 - (39%)	Gaps:	25/261 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly    80 ESYNYDWDQGPHTWD-----TACNNQSPINIDMNCVEINYFDTPLIWSHYNSIPLGIRLENNGHT 139
            :.:.|....||..|.     ...:||||  |:::..:|.:..:...||..........:.|||.|
  Rat     3 KEWGYASHNGPEHWHELYPIAKGDNQSP--IELHTKDIRHDPSLQPWSVSYDPGSAKTILNNGKT 65

  Fly   140 LILRAAFPER--TPSIDGGDLLGRFDFREISFRWSWASSLGSEHTLDHHHSPLEMQCLH------ 196
              .|..|.:.  ...:.||.|.|.:..|:....|..:...|||||:|......|:..:|
  Rat    66 --CRVVFDDTFDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPKYN 128

  Fly   197 TDGDGCDGCSSSQGVLMISYMFDLSEHNPFLDVLIQHLAAVEQAGQVVEVPPFPLSYLMSPFYDK 261
            |.|   :......|:.::.....:........:|:..|..::..|:......|..|.|. |....
  Rat   129 TFG---EALKQPDGIAVVGIFLKIGREKGEFQILLDALDKIKTKGKEAPFNHFDPSCLF-PACRD 189

  Fly   262 FYSYNGSLTEPPCHRGAEWLIYPESLAISERQLNEFRQL----RDRRGSRIARNARPVQPIGDRM 322
            :::|:||.|.|||.....||:..|.:.:|..|:.:.|.|    .:.....:..|.||.|||..|:
  Rat   190 YWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFASAENEPPVPLVGNWRPPQPIKGRV 254

  Fly   323 V 323
            |
  Rat   255 V 255

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.